RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 NDPQ00604 133 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 LINC01559Q495D7 138 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 IGFL4Q6B9Z1 124 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 OR5A1Q8NGJ0 315 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 RAB37Q96AX2 223 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 TIMD4Q96H15 378 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 CCL19Q99731 98 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 CENPEQ02224 2701 aa8.4□□□□□ -1.06
VPS4B-206ENST00000591475 CELSR2Q9HCU4 2923 aa8.4□□□□□ -1.07
VPS4B-206ENST00000591475 A0A1W2PPM0 123 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 SAP30O75446 220 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 LY6HO94772 140 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 TNFRSF6BO95407 300 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 CTSGP08311 255 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 PRTN3P24158 256 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 CCDC144NLQ6NUI1 221 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 ZNF575Q86XF7 245 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 NAA38Q9BRA0 125 aaKnown RBP8.39□□□□□ -1.07
VPS4B-206ENST00000591475 CSTL1Q9H114 145 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 ZMAT4Q9H898 229 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 MSRB1Q9NZV6 116 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 SMIM13P0DJ93 91 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 ODF1Q14990 250 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 PSMG3-AS1Q96PY0 264 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 HIGD1BQ9P298 99 aa8.39□□□□□ -1.07
VPS4B-206ENST00000591475 PRSS1P07477 247 aa8.38□□□□□ -1.07
VPS4B-206ENST00000591475 DYNAPQ8N1N2 210 aa8.38□□□□□ -1.07
VPS4B-206ENST00000591475 SPCS1Q9Y6A9 102 aa8.38□□□□□ -1.07
VPS4B-206ENST00000591475 GCN1Q92616 2671 aaKnown RBP8.38□□□□□ -1.07
VPS4B-206ENST00000591475 RBAKDNA6NC62 111 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 OOSP1A8MZH6 123 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 ATP5LO75964 103 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 IGKCP01834 107 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 FABP2P12104 132 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 ERCC8Q13216 396 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 Q8N6K4 173 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 SMPXQ9UHP9 88 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 G3V4G9 280 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 EVI2AP22794 236 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 RAB9AP51151 201 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 NEGR1Q7Z3B1 354 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 VMO1Q7Z5L0 202 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 Q8N8P6 123 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 HHLA3Q9XRX5 114 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 AKAP6Q13023 2319 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 FBN2P35556 2912 aa8.37□□□□□ -1.07
VPS4B-206ENST00000591475 IGKV2D-26A0A0A0MRZ7 120 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 DPM2O94777 84 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 GAS8-AS1O95177 125 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 TMEM11P17152 192 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 GCSHP23434 173 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 EBI3Q14213 229 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 SAMD5Q5TGI4 173 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 TMEM158Q8WZ71 300 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 FOXC2Q99958 501 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 CHAC1Q9BUX1 264 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 ARHGAP32A7KAX9 2087 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 ASH1LQ9NR48 2969 aaKnown RBP8.36□□□□□ -1.07
VPS4B-206ENST00000591475 IGHV3OR16-8A0A075B7F1 116 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 PRAC2D3DTV9 90 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 HLA-DRB4P13762 266 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 PPIFP30405 207 aaKnown RBP8.36□□□□□ -1.07
VPS4B-206ENST00000591475 TM4SF20Q53R12 229 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 IL17RELQ6ZVW7 336 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 SLC50A1Q9BRV3 221 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 HLA-DRB4X5D2U9 266 aa8.36□□□□□ -1.07
VPS4B-206ENST00000591475 CSMD2Q7Z408 3487 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 SPG11Q96JI7 2443 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 IGHV7-81A0A0B4J1V7 117 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 IGHV3-35A0A0C4DH35 117 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 IGHV4-39P01824 125 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 GATA1P15976 413 aaPredicted RBP8.35□□□□□ -1.07
VPS4B-206ENST00000591475 MINOS1Q5TGZ0 78 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 SELENOKQ9Y6D0 94 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 MINOS1-NBL1R4GNA1 71 aa8.35□□□□□ -1.07
VPS4B-206ENST00000591475 IGLV2-18A0A075B6J9 118 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 BUB3O43684 328 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 FXYD2P54710 66 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 RIPPLY3P57055 190 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 C1orf122Q6ZSJ8 110 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 RNF182Q8N6D2 247 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 FAM110DQ8TAY7 271 aaPredicted RBP8.34□□□□□ -1.07
VPS4B-206ENST00000591475 ZNF502Q8TBZ5 544 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 ZFAND3Q9H8U3 227 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 SMIM17P0DL12 118 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 ATP5J2P56134 94 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 C15orf32Q32M92 178 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 GTSCR1Q86UQ5 136 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 PTPN13Q12923 2485 aa8.34□□□□□ -1.07
VPS4B-206ENST00000591475 DOPEY2Q9Y3R5 2298 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 TRBV25-1A0A075B6N4 114 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 IGKV3D-20A0A0C4DH25 116 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 PRSS47A8MTI9 375 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 NDUFS8O00217 210 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 TRGV3P03979 118 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 LAGE3Q14657 143 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 TMEM78Q5T7P6 136 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 ZC2HC1BQ5TFG8 222 aa8.33□□□□□ -1.08
VPS4B-206ENST00000591475 Q8N9W7 124 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms