RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TOMM20LQ6UXN7 152 aa0.21□□□□□ -2.38
SCFD1-218ENST00000556256 TCTEX1D1Q8N7M0 179 aa0.21□□□□□ -2.38
SCFD1-218ENST00000556256 NAT14Q8WUY8 206 aa0.21□□□□□ -2.38
SCFD1-218ENST00000556256 C19orf12Q9NSK7 152 aa0.21□□□□□ -2.38
SCFD1-218ENST00000556256 CBLN4Q9NTU7 201 aa0.21□□□□□ -2.38
SCFD1-218ENST00000556256 USP54Q70EL1 1684 aa0.21□□□□□ -2.38
SCFD1-218ENST00000556256 DSPPQ9NZW4 1301 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 NBDYA0A0U1RRE5 68 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 LOC107986453A0A1B0GWG9 222 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 CRYGSP22914 178 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 RPS3P23396 243 aaKnown RBP eCLIP0.2□□□□□ -2.38
SCFD1-218ENST00000556256 BLCAPP62952 87 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 QRFPP83859 136 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 TFAMQ00059 246 aaKnown RBP0.2□□□□□ -2.38
SCFD1-218ENST00000556256 GLYATL3Q5SZD4 288 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 OR9Q1Q8NGQ5 310 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 MRPL35Q9NZE8 188 aaKnown RBP0.2□□□□□ -2.38
SCFD1-218ENST00000556256 ANKRD31Q8N7Z5 1873 aa0.2□□□□□ -2.38
SCFD1-218ENST00000556256 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.19□□□□□ -2.38
SCFD1-218ENST00000556256 A0A1B0GV72 72 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 ARL5CA6NH57 179 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 IGF2P01344 180 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 EVI2AP22794 236 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 TMEM128Q5BJH2 165 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 C3orf62Q6ZUJ4 267 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 OR51A4Q8NGJ6 313 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 LINC00208Q96KT6 92 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 AP1S3Q96PC3 154 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 DDA1Q9BW61 102 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 TRAPPC2LQ9UL33 140 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 V9GYQ6 96 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 FRAS1Q86XX4 4008 aa0.19□□□□□ -2.38
SCFD1-218ENST00000556256 USP24Q9UPU5 2620 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 NUP210Q8TEM1 1887 aaPredicted RBP0.18□□□□□ -2.38
SCFD1-218ENST00000556256 A2MP01023 1474 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 LOC107984156A0A0G2JMH3 177 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 PRORSD1PA6NEY8 169 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 IFITM5A6NNB3 132 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 BBIP1A8MTZ0 92 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 LY6G6CO95867 125 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 IFNA21P01568 189 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 RPL22P35268 128 aaKnown RBP0.18□□□□□ -2.38
SCFD1-218ENST00000556256 SNRPD3P62318 126 aaKnown RBP0.18□□□□□ -2.38
SCFD1-218ENST00000556256 FXYD3Q14802 87 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 ASB16-AS1Q495Z4 193 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 ARL17AQ8IVW1 177 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 C5orf56Q8N8D9 126 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 CCDC115Q96NT0 180 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 COMMD3Q9UBI1 195 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 NEBP20929 6669 aa0.18□□□□□ -2.38
SCFD1-218ENST00000556256 KIAA1549LQ6ZVL6 1849 aa0.17□□□□□ -2.38
SCFD1-218ENST00000556256 PGRMC1O00264 195 aaKnown RBP0.17□□□□□ -2.38
SCFD1-218ENST00000556256 HBDP02042 147 aa0.17□□□□□ -2.38
SCFD1-218ENST00000556256 RPL37P61927 97 aaKnown RBP0.17□□□□□ -2.38
SCFD1-218ENST00000556256 OR5A2Q8NGI9 324 aa0.17□□□□□ -2.38
SCFD1-218ENST00000556256 MRPL36Q9P0J6 103 aaKnown RBP0.17□□□□□ -2.38
SCFD1-218ENST00000556256 PBRM1Q86U86 1689 aa0.17□□□□□ -2.38
SCFD1-218ENST00000556256 LOC101927531A0A1B0GV80 90 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 TMEM189A5PLL7 270 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 HIGD1CA8MV81 97 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 M0QZK8 103 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 UQCRQO14949 82 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 EDF1O60869 148 aaKnown RBP0.16□□□□□ -2.38
SCFD1-218ENST00000556256 KDELR1P24390 212 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 ETV6P41212 452 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 GTF2A1P52655 376 aaPredicted RBP0.16□□□□□ -2.38
SCFD1-218ENST00000556256 RPS28P62857 69 aaKnown RBP0.16□□□□□ -2.38
SCFD1-218ENST00000556256 SPINK13Q1W4C9 94 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 SAMD13Q5VXD3 122 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 LYPD5Q6UWN5 251 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.16□□□□□ -2.38
SCFD1-218ENST00000556256 BRK1Q8WUW1 75 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 WDR97A6NE52 1622 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 NAV3Q8IVL0 2385 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 ZDBF2Q9HCK1 2354 aa0.16□□□□□ -2.38
SCFD1-218ENST00000556256 APCP25054 2843 aa0.15□□□□□ -2.38
SCFD1-218ENST00000556256 TMEM30CPA0ZSE6 113 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 CDC42EP2O14613 210 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 SLC25A5P05141 298 aaKnown RBP0.15□□□□□ -2.39
SCFD1-218ENST00000556256 SPTBP11277 2137 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 RHOHQ15669 191 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 ZNF56Q15929 161 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 Q5XG85 94 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 OR8J3Q8NGG0 315 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 OTOSQ8NHW6 89 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 SMIM7Q9BQ49 75 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 MED23Q9ULK4 1368 aa0.15□□□□□ -2.39
SCFD1-218ENST00000556256 PTPRGP23470 1445 aa0.14□□□□□ -2.39
SCFD1-218ENST00000556256 TPST1O60507 370 aa0.14□□□□□ -2.39
SCFD1-218ENST00000556256 IGKCP01834 107 aa0.14□□□□□ -2.39
SCFD1-218ENST00000556256 LSM3P62310 102 aaKnown RBP0.14□□□□□ -2.39
SCFD1-218ENST00000556256 DMAC1Q96GE9 116 aa0.14□□□□□ -2.39
SCFD1-218ENST00000556256 NDUFAF1Q9Y375 327 aa0.14□□□□□ -2.39
SCFD1-218ENST00000556256 TANC2Q9HCD6 1990 aa0.14□□□□□ -2.39
SCFD1-218ENST00000556256 CACNA1EQ15878 2313 aa0.13□□□□□ -2.39
SCFD1-218ENST00000556256 A0A096LNT2 108 aa0.13□□□□□ -2.39
SCFD1-218ENST00000556256 A0A0G2JMM0 328 aa0.13□□□□□ -2.39
SCFD1-218ENST00000556256 NBEAP1P0C6P0 100 aa0.13□□□□□ -2.39
SCFD1-218ENST00000556256 CKS2P33552 79 aa0.13□□□□□ -2.39
SCFD1-218ENST00000556256 IDO2Q6ZQW0 420 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms