RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 MRPL53Q96EL3 112 aaKnown RBP7.47□□□□□ -1.21
SYNE1-230ENST00000495090 SLC50A1Q9BRV3 221 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 SMIM2Q9BVW6 85 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 PGPEP1Q9NXJ5 209 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 TRGV3P03979 118 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 SPINK8P0C7L1 97 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 UBE2D3P61077 147 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 UBE2D2P62837 147 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 C5orf64Q2M2E5 130 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 NEXN-AS1Q8NBZ9 246 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 FAM57AQ8TBR7 257 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 PPDPFLQ8WWR9 84 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 DYNLRB1Q9NP97 96 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 HIF1ANQ9NWT6 349 aa7.46□□□□□ -1.21
SYNE1-230ENST00000495090 SVILO95425 2214 aa7.46□□□□□ -1.22
SYNE1-230ENST00000495090 TSPAN13O95857 204 aa7.46□□□□□ -1.22
SYNE1-230ENST00000495090 COX7A1P24310 79 aa7.46□□□□□ -1.22
SYNE1-230ENST00000495090 TMEM78Q5T7P6 136 aa7.46□□□□□ -1.22
SYNE1-230ENST00000495090 Q6ZUT4 128 aa7.46□□□□□ -1.22
SYNE1-230ENST00000495090 SBSPONQ8IVN8 264 aa7.46□□□□□ -1.22
SYNE1-230ENST00000495090 CITED2Q99967 270 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-230ENST00000495090 RAXQ9Y2V3 346 aa7.46□□□□□ -1.22
SYNE1-230ENST00000495090 ICE1Q9Y2F5 2266 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 TRBV20-1A0A075B6N2 111 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 CTSGP08311 255 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 HLA-DMBP28068 263 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 EFNA4P52798 201 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 DLX1P56177 255 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 DEFB109BQ30KR1 87 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 NFE4Q86UQ8 179 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 TEN1Q86WV5 123 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 WFDC12Q8WWY7 111 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 DPM3Q9P2X0 92 aa7.45□□□□□ -1.22
SYNE1-230ENST00000495090 CENPVL3A0A0U1RRI6 287 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 B9A039 149 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 M0QXV9 152 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 COX6B1P14854 86 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 ERCC8Q13216 396 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 Q5PR19 223 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 LY6G5BQ8NDX9 201 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 SCGB3A1Q96QR1 104 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 S4R3C0 116 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 AGRNO00468 2067 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 ABCA1O95477 2261 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 DMDP11532 3685 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 LINC01549A6NIU2 74 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 PPIFP30405 207 aaKnown RBP7.44□□□□□ -1.22
SYNE1-230ENST00000495090 KLK9Q2XQG4 91 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 PRADC1Q9BSG0 188 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 C11orf21Q9P2W6 132 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 KLK9Q9UKQ9 250 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 ERG28Q9UKR5 140 aa7.44□□□□□ -1.22
SYNE1-230ENST00000495090 DSPP15924 2871 aaKnown RBP7.43□□□□□ -1.22
SYNE1-230ENST00000495090 PRAC2D3DTV9 90 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 TMEM262E9PQX1 116 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 BUB3O43684 328 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 MT-ATP8P03928 68 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 CD7P09564 240 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 IGFL4Q6B9Z1 124 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 UFC1Q9Y3C8 167 aa7.43□□□□□ -1.22
SYNE1-230ENST00000495090 TRAV26-2A0A0B4J265 109 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 ZNF815PA8K554 130 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 M0R381 172 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 XGP55808 180 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 SUMO2P61956 95 aaKnown RBP7.42□□□□□ -1.22
SYNE1-230ENST00000495090 FHL3Q13643 280 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 PAPPA-AS1Q5QFB9 102 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 SPANXN1Q5VSR9 72 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 C9orf47Q6ZRZ4 202 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 AGPAT4-IT1Q9H0P7 198 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 LENEPQ9Y5L5 61 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 A0A0G2JNJ9 132 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 ODF3BA8MYP8 253 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 E7EQL1 145 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 PSMB2P49721 201 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 PRB3Q04118 309 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-230ENST00000495090 BAALCQ8WXS3 180 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 CARD19Q96LW7 228 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 ZFAND3Q9H8U3 227 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 Q9UFV3 132 aa7.42□□□□□ -1.22
SYNE1-230ENST00000495090 A8MWV9 139 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 PPP1R17O96001 155 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 ZNF688P0C7X2 276 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 NDPQ00604 133 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 SCGB1D4Q6XE38 83 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 NDUFA11Q86Y39 141 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 Q8N6K4 173 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 KRTAP3-3Q9BYR6 98 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 KRTAP3-2Q9BYR7 98 aa7.41□□□□□ -1.22
SYNE1-230ENST00000495090 IGHV1-69DA0A0B4J2H0 117 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 LOC107984156A0A0G2JMH3 177 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 OOSP1A8MZH6 123 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 M0R1W7 72 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 MED14OSP0DP75 135 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 HERVK_113P61574 105 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 SRSF9Q13242 221 aaKnown RBP eCLIP7.4□□□□□ -1.22
SYNE1-230ENST00000495090 EBI3Q14213 229 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 ARL17AQ8IVW1 177 aa7.4□□□□□ -1.22
SYNE1-230ENST00000495090 RASL10AQ92737 203 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms