RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 C3orf79P0CE67 100 aa10.41□□□□□ -0.74
COL6A3-212ENST00000491769 ZFP36P26651 326 aaKnown RBP10.41□□□□□ -0.74
COL6A3-212ENST00000491769 GVINP1Q7Z2Y8 2422 aa10.41□□□□□ -0.74
COL6A3-212ENST00000491769 KIF26BQ2KJY2 2108 aa10.41□□□□□ -0.74
COL6A3-212ENST00000491769 SBF2Q86WG5 1849 aa10.41□□□□□ -0.74
COL6A3-212ENST00000491769 Q6ZRM9 215 aa10.4□□□□□ -0.74
COL6A3-212ENST00000491769 H3BUA1 57 aa10.4□□□□□ -0.74
COL6A3-212ENST00000491769 DEFB4AO15263 64 aa10.4□□□□□ -0.74
COL6A3-212ENST00000491769 TRAV13-2A0A0B4J235 113 aa10.4□□□□□ -0.74
COL6A3-212ENST00000491769 TRAV1-1A0A0B4J248 108 aa10.4□□□□□ -0.74
COL6A3-212ENST00000491769 A0A1B0GW64 132 aa10.4□□□□□ -0.74
COL6A3-212ENST00000491769 BOD1L2Q8IYS8 172 aa10.4□□□□□ -0.74
COL6A3-212ENST00000491769 NYNRINQ9P2P1 1898 aaKnown RBP10.4□□□□□ -0.74
COL6A3-212ENST00000491769 C5orf38Q86SI9 138 aa10.4□□□□□ -0.75
COL6A3-212ENST00000491769 CACNA1DQ01668 2161 aa10.4□□□□□ -0.75
COL6A3-212ENST00000491769 DIDO1Q9BTC0 2240 aaKnown RBP10.4□□□□□ -0.75
COL6A3-212ENST00000491769 SMAD5-AS1Q9Y6J3 95 aa10.4□□□□□ -0.75
COL6A3-212ENST00000491769 FOXL2NBQ6ZUU3 175 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 C16orf74Q96GX8 76 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 LY6G6EA0A0G2JKS1 128 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 FAM104BQ5XKR9 115 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 PRR25Q96S07 402 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 U3KQA8 63 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 K7EM74 188 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 GNRH2O43555 120 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 MRPL51Q4U2R6 128 aaKnown RBP10.39□□□□□ -0.75
COL6A3-212ENST00000491769 PIP4P1Q86T03 277 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 KLF2Q9Y5W3 355 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-212ENST00000491769 COL4A6Q14031 1691 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 SHISA9B4DS77 424 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 FOXE3Q13461 319 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 Q8NFD4 153 aa10.39□□□□□ -0.75
COL6A3-212ENST00000491769 CNOT1A5YKK6 2376 aaKnown RBP10.38□□□□□ -0.75
COL6A3-212ENST00000491769 MPV17L2Q567V2 206 aa10.38□□□□□ -0.75
COL6A3-212ENST00000491769 ZNF492Q9P255 531 aa10.38□□□□□ -0.75
COL6A3-212ENST00000491769 TRBV24-1A0A075B6N3 115 aa10.38□□□□□ -0.75
COL6A3-212ENST00000491769 LRRK1Q38SD2 2015 aa10.38□□□□□ -0.75
COL6A3-212ENST00000491769 MPDZO75970 2070 aa10.38□□□□□ -0.75
COL6A3-212ENST00000491769 ATP6V0E2Q8NHE4 81 aa10.38□□□□□ -0.75
COL6A3-212ENST00000491769 PRSS57Q6UWY2 283 aa10.38□□□□□ -0.75
COL6A3-212ENST00000491769 FREM3P0C091 2139 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 WIPF2Q8TF74 440 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-212ENST00000491769 RNF138Q8WVD3 245 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 CYTL1Q9NRR1 136 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 TM2D2Q9BX73 214 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 DEFB135Q30KP9 77 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 ARTNQ5T4W7 220 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 PYGO2Q9BRQ0 406 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 SBF1O95248 1867 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 LINC00311Q8N616 119 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 C9orf153Q5TBE3 101 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 HIST3H2BBQ8N257 126 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 IL17DQ8TAD2 202 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 RNF183Q96D59 192 aa10.37□□□□□ -0.75
COL6A3-212ENST00000491769 UBE2CO00762 179 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 EGR2P11161 476 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-212ENST00000491769 WDR86Q86TI4 376 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 DOCK10Q96BY6 2186 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 WNK3Q9BYP7 1800 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 MRPL36Q9P0J6 103 aaKnown RBP10.36□□□□□ -0.75
COL6A3-212ENST00000491769 Q6ZS49 121 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 ACACAQ13085 2346 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 HLA-DMBP28068 263 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 VOPP1Q96AW1 172 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 LRCOL1A6NCL2 159 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 FGF6P10767 208 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 CT83Q5H943 113 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 TRAV4A0A0B4J268 109 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 ZNF503-AS2A6NEH8 195 aa10.36□□□□□ -0.75
COL6A3-212ENST00000491769 IGHV2-70P01814 119 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 QRFPP83859 136 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 ADAMTSL5Q6ZMM2 481 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 IGKV1-6A0A0C4DH72 117 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 WT1-ASQ06250 92 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 AMTNQ6UX39 209 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 K7EQD1 137 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 NDUFB1O75438 58 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 C9orf47Q6ZRZ4 202 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 NPBQ8NG41 125 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 SIGLEC8Q9NYZ4 499 aa10.35□□□□□ -0.75
COL6A3-212ENST00000491769 LCTP09848 1927 aa10.34□□□□□ -0.75
COL6A3-212ENST00000491769 SH2D6Q7Z4S9 175 aa10.34□□□□□ -0.75
COL6A3-212ENST00000491769 TRACP01848 142 aa10.34□□□□□ -0.75
COL6A3-212ENST00000491769 Q6ZWC4 215 aa10.34□□□□□ -0.75
COL6A3-212ENST00000491769 IGLV1-44P01699 117 aa10.34□□□□□ -0.75
COL6A3-212ENST00000491769 PRB2P02812 416 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-212ENST00000491769 SRSF2Q01130 221 aaKnown RBP10.34□□□□□ -0.75
COL6A3-212ENST00000491769 COX7A2LO14548 114 aa10.34□□□□□ -0.75
COL6A3-212ENST00000491769 BLCAPP62952 87 aa10.34□□□□□ -0.75
COL6A3-212ENST00000491769 SPRY2O43597 315 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 ZNF124Q15973 351 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 PROK2Q9HC23 129 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 GPHB5Q86YW7 130 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 SLC25A29Q8N8R3 303 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 SLX1AQ9BQ83 275 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 GTSF1LQ9H1H1 148 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 FUSP35637 526 aaKnown RBP eCLIP10.33□□□□□ -0.76
COL6A3-212ENST00000491769 USF3Q68DE3 2245 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 TICRRQ7Z2Z1 1910 aa10.33□□□□□ -0.76
COL6A3-212ENST00000491769 CENPVL3A0A0U1RRI6 287 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms