RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 HIGD1CA8MV81 97 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 SH2D1AO60880 128 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 ID1P41134 155 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 RIPPLY3P57055 190 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 COX19Q49B96 90 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 OR9G4Q8NGQ1 327 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 MS4A6AQ9H2W1 248 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 SELENOKQ9Y6D0 94 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 ANK2Q01484 3957 aa10.65□□□□□ -0.7
CUX1-209ENST00000487284 K7EQG2 157 aa10.65□□□□□ -0.71
CUX1-209ENST00000487284 TRGC1P0CF51 173 aa10.65□□□□□ -0.71
CUX1-209ENST00000487284 ZNF80P51504 273 aaPredicted RBP10.65□□□□□ -0.71
CUX1-209ENST00000487284 GTSF1Q8WW33 167 aa10.65□□□□□ -0.71
CUX1-209ENST00000487284 LINC00477Q96M19 166 aa10.65□□□□□ -0.71
CUX1-209ENST00000487284 C5orf52A6NGY3 159 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 FRMD6-AS1P0C7T7 363 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 FABP9Q0Z7S8 132 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 WDR73Q6P4I2 378 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 RASL11AQ6T310 242 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 LINC00482Q8N8I6 264 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 OR8A1Q8NGG7 326 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 OR10J6PQ8NGY7 276 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 GNB1LQ9BYB4 327 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 TRAPPC1Q9Y5R8 145 aa10.64□□□□□ -0.71
CUX1-209ENST00000487284 SPINK4O60575 86 aa10.63□□□□□ -0.71
CUX1-209ENST00000487284 MT-ND6P03923 174 aa10.63□□□□□ -0.71
CUX1-209ENST00000487284 S100A6P06703 90 aa10.63□□□□□ -0.71
CUX1-209ENST00000487284 CSN3P07498 182 aa10.63□□□□□ -0.71
CUX1-209ENST00000487284 FOXA3P55318 350 aaPredicted RBP10.63□□□□□ -0.71
CUX1-209ENST00000487284 MRPL54Q6P161 138 aaKnown RBP10.63□□□□□ -0.71
CUX1-209ENST00000487284 RBPMS2Q6ZRY4 209 aaKnown RBP10.63□□□□□ -0.71
CUX1-209ENST00000487284 ATP5L2Q7Z4Y8 100 aa10.63□□□□□ -0.71
CUX1-209ENST00000487284 A0A1B0GXF2 115 aa10.62□□□□□ -0.71
CUX1-209ENST00000487284 ZNF705DP0CH99 300 aaPredicted RBP10.62□□□□□ -0.71
CUX1-209ENST00000487284 ZNF705BP0CI00 300 aaPredicted RBP10.62□□□□□ -0.71
CUX1-209ENST00000487284 TMEM136Q6ZRR5 245 aa10.62□□□□□ -0.71
CUX1-209ENST00000487284 SPATA3Q8NHX4 192 aa10.62□□□□□ -0.71
CUX1-209ENST00000487284 SAV1Q9H4B6 383 aaPredicted RBP10.62□□□□□ -0.71
CUX1-209ENST00000487284 TRBV7-9A0A0J9YWB2 115 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 TMEM189A5PLL7 270 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 FABP5P3A8MUU1 101 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 SNURFLB1AK76 121 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 GZMBP10144 247 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 DEFB1P60022 68 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 SNRPEP62304 92 aaKnown RBP10.61□□□□□ -0.71
CUX1-209ENST00000487284 WFDC3Q8IUB2 231 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 FAM19A4Q96LR4 140 aa10.61□□□□□ -0.71
CUX1-209ENST00000487284 MRPL18Q9H0U6 180 aaKnown RBP10.61□□□□□ -0.71
CUX1-209ENST00000487284 TRAV2A0A0B4J234 112 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 XKRY2A2RUG3 117 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 F6UB75 175 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 HLA-DQA1P01909 254 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 TFPI2P48307 235 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 RPS20P60866 119 aaKnown RBP10.6□□□□□ -0.71
CUX1-209ENST00000487284 SNRPD3P62318 126 aaKnown RBP10.6□□□□□ -0.71
CUX1-209ENST00000487284 HIST1H1AQ02539 215 aaPredicted RBP10.6□□□□□ -0.71
CUX1-209ENST00000487284 Q6AWC8 147 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 PKD1L1Q8TDX9 2849 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 UBE2CO00762 179 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 ZNF688P0C7X2 276 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 PAFAH1B2P68402 229 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 ZFAND2AQ8N6M9 145 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 PGLYRP4Q96LB8 373 aa10.6□□□□□ -0.71
CUX1-209ENST00000487284 NOTCH3Q9UM47 2321 aa10.59□□□□□ -0.71
CUX1-209ENST00000487284 CRISP2P16562 243 aa10.59□□□□□ -0.71
CUX1-209ENST00000487284 NDUFA6P56556 154 aa10.59□□□□□ -0.71
CUX1-209ENST00000487284 LINC01559Q495D7 138 aa10.59□□□□□ -0.71
CUX1-209ENST00000487284 PSMG4Q5JS54 123 aa10.59□□□□□ -0.71
CUX1-209ENST00000487284 APRG1Q8IVJ8 170 aa10.59□□□□□ -0.71
CUX1-209ENST00000487284 SAP30O75446 220 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 HBBP68871 147 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 DEFB114Q30KQ6 69 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 PRR9Q5T870 116 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 GDF5OSQ5U4N7 250 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 ZNF575Q86XF7 245 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 TMEM61Q8N0U2 210 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 DYNLRB2Q8TF09 96 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 SIGLEC8Q9NYZ4 499 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 AGRNO00468 2067 aa10.58□□□□□ -0.72
CUX1-209ENST00000487284 IGLC6P0CF74 106 aa10.57□□□□□ -0.72
CUX1-209ENST00000487284 HOXA5P20719 270 aa10.57□□□□□ -0.72
CUX1-209ENST00000487284 COA6Q5JTJ3 125 aaKnown RBP10.57□□□□□ -0.72
CUX1-209ENST00000487284 ODF3Q96PU9 254 aa10.57□□□□□ -0.72
CUX1-209ENST00000487284 C11orf21Q9P2W6 132 aa10.57□□□□□ -0.72
CUX1-209ENST00000487284 DNHD1Q96M86 4753 aa10.57□□□□□ -0.72
CUX1-209ENST00000487284 TMSB15BA0A087X1C1 80 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 A0A0J9YX75 114 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 A0A1B0GUT8 65 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 ORM1P02763 201 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 CTRLP40313 264 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 RAB4BP61018 213 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 SORL1Q92673 2214 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 TRAV25A0A0B4J276 109 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 A0A1B0GW15 77 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 ARMS2P0C7Q2 107 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 CD33P20138 364 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 CAMPP49913 170 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 RIGQ13278 110 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 GATD1Q8NB37 220 aa10.56□□□□□ -0.72
CUX1-209ENST00000487284 IGKV3D-20A0A0C4DH25 116 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms