RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SOX21Q9Y651 276 aaPredicted RBP2.64□□□□□ -1.99
PTCD3-216ENST00000487043 TNCP24821 2201 aa2.64□□□□□ -1.99
PTCD3-216ENST00000487043 CREBBPQ92793 2442 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 ABCA1O95477 2261 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 FLNAP21333 2647 aaKnown RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 BORCS7-ASMTA0A0B4J1R7 106 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 A0A1B0GW64 132 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 WI2-2373I1.2A0A1W2PRP0 233 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 IGLC7A0M8Q6 106 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 H3BP45 60 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 H3BUX3 64 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 M0QZK8 103 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 CNIH1O95406 144 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 CA2P00918 260 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 GCGP01275 180 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 HLA-DRB1P01911 266 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 METTL15P1P0C7V9 234 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 OR13C7P0DN81 318 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 RNASE2P10153 161 aaKnown RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 NPY1RP25929 384 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 SNCAP37840 140 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 MYCNOSP40205 109 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 RPL27AP46776 148 aaKnown RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 RAB5CP51148 216 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 RAB2AP61019 212 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 HBG1P69891 147 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 HBG2P69892 147 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 SLC35B1P78383 322 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 DEFA6Q01524 100 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 WT1-ASQ06250 92 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 FXYD3Q14802 87 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 PLGLAQ15195 96 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 RBMY1FQ15415 496 aaKnown RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 C10orf55Q5SWW7 151 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 DNLZQ5SXM8 178 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 C10orf91Q5T1B1 145 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 RPL7L1Q6DKI1 246 aaKnown RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 ALKAL2Q6UX46 152 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 BAP18Q8IXM2 172 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 C5orf56Q8N8D9 126 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 UBAC2Q8NBM4 344 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 OR10P1Q8NGE3 313 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 OR5C1Q8NGR4 320 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 STOML3Q8TAV4 291 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 SRSF12Q8WXF0 261 aaKnown RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 C22orf15Q8WYQ4 148 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 OR4C12Q96R67 309 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 GGACTQ9BVM4 153 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 ZNF471Q9BX82 626 aaPredicted RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 MAP1LC3CQ9BXW4 147 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 SEC11CQ9BY50 192 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 SMIM3Q9BZL3 60 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 ARV1Q9H2C2 271 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 TUBA4BQ9H853 241 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 WFDC1Q9HC57 220 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 NIT2Q9NQR4 276 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 SMCO4Q9NRQ5 59 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 CARHSP1Q9Y2V2 147 aaKnown RBP2.63□□□□□ -1.99
PTCD3-216ENST00000487043 V9GYY9 64 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 CSPG4Q6UVK1 2322 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 MYO9AB2RTY4 2548 aa2.63□□□□□ -1.99
PTCD3-216ENST00000487043 MXRA5Q9NR99 2828 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 NOTCH2Q04721 2471 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 A0A096LNJ9 63 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 IGHV3OR16-9A0A0B4J2B5 98 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 MDFIC2A0A1B0GVS7 189 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 A0A1B0GVX0 72 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 FNDC10F2Z333 226 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 CORTO00230 105 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 IFNA5P01569 189 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 MT-ND4LP03901 98 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 SEC11BP0C7V7 166 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 TPT1P13693 172 aaKnown RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 CD99P14209 185 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 MDKP21741 143 aaPredicted RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 SRP14P37108 136 aaKnown RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 SYNJ2BPP57105 145 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 BLCAPP62952 87 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 SLC38A11Q08AI6 406 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 TMEM267Q0VDI3 215 aaPredicted RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 LY6EQ16553 131 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 KLK9Q2XQG4 91 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 AKIRIN2Q53H80 203 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 TTC9CQ8N5M4 171 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 TMEM86BQ8N661 226 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 LFNGQ8NES3 379 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 OR1P1Q8NH06 330 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 SGMS2Q8NHU3 365 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 SCGB1C1Q8TD33 95 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 RNASEH2CQ8TDP1 164 aaKnown RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 UBE2E2Q96LR5 201 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 PFDN5Q99471 154 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 GINS3Q9BRX5 216 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 FAM103A1Q9BTL3 118 aaKnown RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 PARD6GQ9BYG4 376 aaPredicted RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 NPVFQ9HCQ7 196 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 UQCC1Q9NVA1 299 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 KLK9Q9UKQ9 250 aa2.62□□□□□ -1.99
PTCD3-216ENST00000487043 FLNBO75369 2602 aaKnown RBP2.62□□□□□ -1.99
PTCD3-216ENST00000487043 PLXNB1O43157 2135 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms