RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 PEG3Q9GZU2 1588 aa0.96□□□□□ -2.26
SMC4-218ENST00000486711 PRDM2Q13029 1718 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 TOP2AP11388 1531 aaKnown RBP0.95□□□□□ -2.26
SMC4-218ENST00000486711 POLA1P09884 1462 aaPredicted RBP0.95□□□□□ -2.26
SMC4-218ENST00000486711 ARHGAP35Q9NRY4 1499 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 PRORSD1PA6NEY8 169 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 NUPR2A6NF83 97 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 ETV6P41212 452 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 CCSMST1Q4G0I0 132 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 TCTEX1D1Q8N7M0 179 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 OR51A4Q8NGJ6 313 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 BRK1Q8WUW1 75 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 LPAR5Q9H1C0 372 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 MRPL40Q9NQ50 206 aaKnown RBP0.95□□□□□ -2.26
SMC4-218ENST00000486711 NDUFAF1Q9Y375 327 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 HFM1A2PYH4 1435 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 SOGA1O94964 1423 aa0.95□□□□□ -2.26
SMC4-218ENST00000486711 SMG6Q86US8 1419 aaKnown RBP0.95□□□□□ -2.26
SMC4-218ENST00000486711 HMGXB3Q12766 1538 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 CUL7Q14999 1698 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 NKTRP30414 1462 aaKnown RBP0.94□□□□□ -2.26
SMC4-218ENST00000486711 CCDC141Q6ZP82 1450 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 CC2D2AQ9P2K1 1620 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 A0A1W2PPB8 328 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 A0A1W2PRS3 328 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 KIR3DP1A8MWS1 328 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 M0QZK8 103 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 IGHV3-30P01768 117 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 IGHV3-30-5P0DP03 117 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 RPS3P23396 243 aaKnown RBP eCLIP0.94□□□□□ -2.26
SMC4-218ENST00000486711 RPL22P35268 128 aaKnown RBP0.94□□□□□ -2.26
SMC4-218ENST00000486711 B2MP61769 119 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 BLCAPP62952 87 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 SPINK9Q5DT21 86 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 Q86TA4 180 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 OR5A2Q8NGI9 324 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 AHNAKQ09666 5890 aaKnown RBP0.94□□□□□ -2.26
SMC4-218ENST00000486711 SUPT6HQ7KZ85 1726 aaKnown RBP0.94□□□□□ -2.26
SMC4-218ENST00000486711 ANKRD36BQ8N2N9 1353 aa0.94□□□□□ -2.26
SMC4-218ENST00000486711 ASCC3Q8N3C0 2202 aaKnown RBP0.93□□□□□ -2.26
SMC4-218ENST00000486711 SCRIBQ14160 1630 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 EIF2AK4Q9P2K8 1649 aaKnown RBP0.93□□□□□ -2.26
SMC4-218ENST00000486711 FYCO1Q9BQS8 1478 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 RAPGEF2Q9Y4G8 1499 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 CCDC171Q6TFL3 1326 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 ARHGAP31Q2M1Z3 1444 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 FAM135BQ49AJ0 1406 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 MYOM3Q5VTT5 1437 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 IFITM5A6NNB3 132 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 EDF1O60869 148 aaKnown RBP0.93□□□□□ -2.26
SMC4-218ENST00000486711 HBDP02042 147 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 GYPBP06028 91 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 SLC25A4P12235 298 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 GTF2A1P52655 376 aaPredicted RBP0.93□□□□□ -2.26
SMC4-218ENST00000486711 SNRPD3P62318 126 aaKnown RBP0.93□□□□□ -2.26
SMC4-218ENST00000486711 SARNPP82979 210 aaKnown RBP0.93□□□□□ -2.26
SMC4-218ENST00000486711 NAT14Q8WUY8 206 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 SMIM7Q9BQ49 75 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 GINS2Q9Y248 185 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 ITSN2Q9NZM3 1697 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 EHBP1L1Q8N3D4 1523 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 IBTKQ9P2D0 1353 aaPredicted RBP0.93□□□□□ -2.26
SMC4-218ENST00000486711 TOP2BQ02880 1626 aa0.93□□□□□ -2.26
SMC4-218ENST00000486711 UHRF1BP1LA0JNW5 1464 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 TEX14Q8IWB6 1497 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 WDR7Q9Y4E6 1490 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 NUP210Q8TEM1 1887 aaPredicted RBP0.92□□□□□ -2.26
SMC4-218ENST00000486711 TET1Q8NFU7 2136 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 POLR1AO95602 1720 aaPredicted RBP0.92□□□□□ -2.26
SMC4-218ENST00000486711 LAMC3Q9Y6N6 1575 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 FGD6Q6ZV73 1430 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 A6NN06 94 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 J3KT08 172 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 SNAPC5O75971 98 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 FXYD6P3P58550 94 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 ATOH7Q8N100 152 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 OR8J3Q8NGG0 315 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 CCL19Q99731 98 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 C19orf12Q9NSK7 152 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 BIVM-ERCC5R4GMW8 1640 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 NCOA2Q15596 1464 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 TENM3Q9P273 2699 aa0.92□□□□□ -2.26
SMC4-218ENST00000486711 CASKIN1Q8WXD9 1431 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 NSD3Q9BZ95 1437 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 ASXL1Q8IXJ9 1541 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 KDM5DQ9BY66 1539 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 ARHGEF12Q9NZN5 1544 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 FAM135AQ9P2D6 1515 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 ANKRD31Q8N7Z5 1873 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 NESP48681 1621 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 TMEM189A5PLL7 270 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 UQCRQO14949 82 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 PRB4P10163 310 aaPredicted RBP0.91□□□□□ -2.26
SMC4-218ENST00000486711 CKS2P33552 79 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 RPS28P62857 69 aaKnown RBP0.91□□□□□ -2.26
SMC4-218ENST00000486711 PSPHP78330 225 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 Q6ZS92 163 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 OR8I2Q8N0Y5 310 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 SPANXA1Q9NS26 97 aa0.91□□□□□ -2.26
SMC4-218ENST00000486711 RALGAPBQ86X10 1494 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms