RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 HSD17B12Q53GQ0 312 aa1.55□□□□□ -2.16
UPF3B-203ENST00000478840 LZICQ8WZA0 190 aa1.55□□□□□ -2.16
UPF3B-203ENST00000478840 IFITM5A6NNB3 132 aa1.54□□□□□ -2.16
UPF3B-203ENST00000478840 ZNF727A8MUV8 499 aa1.54□□□□□ -2.16
UPF3B-203ENST00000478840 DNAJB13P59910 316 aa1.54□□□□□ -2.16
UPF3B-203ENST00000478840 AMELYQ99218 206 aa1.54□□□□□ -2.16
UPF3B-203ENST00000478840 FGD6Q6ZV73 1430 aa1.54□□□□□ -2.16
UPF3B-203ENST00000478840 CHD3Q12873 2000 aaKnown RBP1.54□□□□□ -2.16
UPF3B-203ENST00000478840 IGLV3-1P01715 115 aa1.53□□□□□ -2.16
UPF3B-203ENST00000478840 ARHGAP31Q2M1Z3 1444 aa1.53□□□□□ -2.16
UPF3B-203ENST00000478840 SPATA45Q537H7 98 aa1.53□□□□□ -2.16
UPF3B-203ENST00000478840 TMEM91Q6ZNR0 172 aa1.53□□□□□ -2.16
UPF3B-203ENST00000478840 MAFIPQ8WZ33 124 aa1.53□□□□□ -2.16
UPF3B-203ENST00000478840 AP1S3Q96PC3 154 aa1.53□□□□□ -2.16
UPF3B-203ENST00000478840 WFDC10AQ9H1F0 79 aa1.53□□□□□ -2.16
UPF3B-203ENST00000478840 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.53□□□□□ -2.16
UPF3B-203ENST00000478840 MUC4Q99102 2169 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 NCOA6Q14686 2063 aaPredicted RBP1.52□□□□□ -2.17
UPF3B-203ENST00000478840 CKS1BP61024 79 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 SMCO1Q147U7 214 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 NEDD8Q15843 81 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 C5orf17Q8NAS9 161 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 OTOSQ8NHW6 89 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 CALML5Q9NZT1 146 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 METTL1Q9UBP6 276 aaKnown RBP1.52□□□□□ -2.17
UPF3B-203ENST00000478840 PTPRDP23468 1912 aa1.52□□□□□ -2.17
UPF3B-203ENST00000478840 MYH1P12882 1939 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 PNMA8CA0A1B0GUJ8 204 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 A6NN06 94 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 CD14P08571 375 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 HIST1H1BP16401 226 aaKnown RBP1.51□□□□□ -2.17
UPF3B-203ENST00000478840 PDE6GP18545 87 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 CKS2P33552 79 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 SBSPONQ8IVN8 264 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 TCTEX1D1Q8N7M0 179 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 KDM5CP41229 1560 aa1.51□□□□□ -2.17
UPF3B-203ENST00000478840 LOC107984156A0A0G2JMH3 177 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 SMIM24O75264 130 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 IGHV3-30P01768 117 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 IGHV3-30-5P0DP03 117 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 HLA-DRB4P13762 266 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 AKR1D1P51857 326 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 S100A12P80511 92 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 ARL17AQ8IVW1 177 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 LIMD2Q9BT23 127 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 LPAR5Q9H1C0 372 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 BANF2Q9H503 90 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 HLA-DRB4X5D2U9 266 aa1.5□□□□□ -2.17
UPF3B-203ENST00000478840 EDF1O60869 148 aaKnown RBP1.49□□□□□ -2.17
UPF3B-203ENST00000478840 ARPC4P59998 168 aa1.49□□□□□ -2.17
UPF3B-203ENST00000478840 PCBD1P61457 104 aa1.49□□□□□ -2.17
UPF3B-203ENST00000478840 SMIM7Q9BQ49 75 aa1.49□□□□□ -2.17
UPF3B-203ENST00000478840 DNAJC15Q9Y5T4 150 aa1.49□□□□□ -2.17
UPF3B-203ENST00000478840 ANK1P16157 1881 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 BBIP1A8MTZ0 92 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 NCR3O14931 201 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 SULT1C4O75897 302 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 CD3DP04234 171 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 SNRPD3P62318 126 aaKnown RBP1.48□□□□□ -2.17
UPF3B-203ENST00000478840 OR10AC1Q8NH08 325 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 FANCMQ8IYD8 2048 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 OVOS2A0A0J9YW53 1432 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 PTPRGP23470 1445 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 OVOS2Q6IE36 1432 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 TET1Q8NFU7 2136 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 ROS1P08922 2347 aa1.48□□□□□ -2.17
UPF3B-203ENST00000478840 IGHV1-24A0A0C4DH33 117 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 A0A1W2PPB8 328 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 A0A1W2PRS3 328 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 KIR3DP1A8MWS1 328 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 MPC1LP0DKB6 136 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 EVI2AP22794 236 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 EFNA4P52798 201 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 HIST1H1AQ02539 215 aaPredicted RBP1.47□□□□□ -2.17
UPF3B-203ENST00000478840 C3orf62Q6ZUJ4 267 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 C10orf111Q8N326 155 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 MMGT1Q8N4V1 131 aa1.47□□□□□ -2.17
UPF3B-203ENST00000478840 VIRMAQ69YN4 1812 aaKnown RBP1.47□□□□□ -2.17
UPF3B-203ENST00000478840 CTTNBP2Q8WZ74 1663 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 TRAV23DV6A0A075B6W5 121 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 YPEL1O60688 119 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 KDELR1P24390 212 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 SMIM21Q3B7S5 101 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 OCIAD2Q56VL3 154 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 SLC35B3Q9H1N7 401 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 PAIP2BQ9ULR5 123 aaKnown RBP1.46□□□□□ -2.18
UPF3B-203ENST00000478840 KMT2BQ9UMN6 2715 aaPredicted RBP1.46□□□□□ -2.18
UPF3B-203ENST00000478840 KIDINS220Q9ULH0 1771 aa1.46□□□□□ -2.18
UPF3B-203ENST00000478840 TSPAN19P0C672 248 aa1.45□□□□□ -2.18
UPF3B-203ENST00000478840 PLGLB1Q02325 96 aa1.45□□□□□ -2.18
UPF3B-203ENST00000478840 CSAG1Q6PB30 78 aa1.45□□□□□ -2.18
UPF3B-203ENST00000478840 LINC00575Q6W349 94 aa1.45□□□□□ -2.18
UPF3B-203ENST00000478840 OR8J3Q8NGG0 315 aa1.45□□□□□ -2.18
UPF3B-203ENST00000478840 COPZ2Q9P299 210 aa1.45□□□□□ -2.18
UPF3B-203ENST00000478840 COMMD3Q9UBI1 195 aa1.45□□□□□ -2.18
UPF3B-203ENST00000478840 BOKQ9UMX3 212 aaPredicted RBP1.45□□□□□ -2.18
UPF3B-203ENST00000478840 GYPBP06028 91 aa1.44□□□□□ -2.18
UPF3B-203ENST00000478840 GLYATL3Q5SZD4 288 aa1.44□□□□□ -2.18
UPF3B-203ENST00000478840 UHRF1BP1LA0JNW5 1464 aa1.43□□□□□ -2.18
UPF3B-203ENST00000478840 DISP2A7MBM2 1401 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 200.6 ms