RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SURF2Q15527 256 aaPredicted RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 PRR4Q16378 134 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 AADACL3Q5VUY0 350 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 CNIH2Q6PI25 160 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 FAM159AQ6UWV7 190 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 TMPRSS11AQ6ZMR5 421 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 SDIM1Q6ZPB5 146 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 SMIM20Q8N5G0 67 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 Q8N976 141 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 OR1S2Q8NGQ3 325 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 ZFAND1Q8TCF1 268 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 Q8WTZ3 238 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 TMEM170AQ8WVE7 144 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 FAM3DQ96BQ1 224 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 RPUSD4Q96CM3 377 aaKnown RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 SEC22AQ96IW7 307 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 FUNDC2Q9BWH2 189 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 TM2D2Q9BX73 214 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 MRPL32Q9BYC8 188 aaKnown RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 NAA50Q9GZZ1 169 aaKnown RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 SS18L2Q9UHA2 77 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 HHLA3Q9XRX5 114 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 KLF12Q9Y4X4 402 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 USH2AO75445 5202 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 C1orf196B1AJZ1 125 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 F6UZH7 168 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 INS-IGF2F8WCM5 200 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 PDE6DO43924 150 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 SPINK4O60575 86 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 PGLYRP1O75594 196 aaPredicted RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 TSPAN13O95857 204 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 SFTA3P0C7M3 94 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 S100A2P29034 98 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 FCGR2CP31995 323 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 WNT4P56705 351 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 FXYD4P59646 89 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 RPS20P60866 119 aaKnown RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 SUPT4H1P63272 117 aaKnown RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 MRPS10P82664 201 aaKnown RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 ERHP84090 104 aaKnown RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 HIST1H1AQ02539 215 aaPredicted RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 CLLU1Q5K131 121 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 SFXN4Q6P4A7 337 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 NRARPQ7Z6K4 114 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 NOXA1Q86UR1 476 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 C8orf59Q8N0T1 100 aaPredicted RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 MS4A15Q8N5U1 240 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 OR8A1Q8NGG7 326 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 LYPD6BQ8NI32 183 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 PCNPQ8WW12 178 aaKnown RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 CYGBQ8WWM9 190 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 ISOC2Q96AB3 205 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 ARL6Q9H0F7 186 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 MRPL16Q9NX20 251 aaKnown RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 FKBP11Q9NYL4 201 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 AK6Q9Y3D8 172 aaKnown RBP2.97□□□□□ -1.93
USP4-209ENST00000475873 AP4S1Q9Y587 144 aa2.97□□□□□ -1.93
USP4-209ENST00000475873 IGKV1D-37A0A075B6S9 117 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 TRAV30A0A087WSZ9 112 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 A0A087WWL8 130 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 A0A087WYN8 130 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 USP17L23D6RBM5 183 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 HPGDSO60760 199 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 ORM1P02763 201 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 CD1AP06126 327 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 UCHL1P09936 223 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 CHTF8P0CG12 524 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 HOXB6P17509 224 aaKnown RBP2.96□□□□□ -1.94
USP4-209ENST00000475873 PTTG1IPP53801 180 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 PLP1P60201 277 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 RHOBP62745 196 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 OR2F1Q13607 317 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 C1orf194Q5T5A4 169 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 LCE3BQ5TA77 95 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 LCE2CQ5TA81 110 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 DAZ4Q86SG3 579 aaKnown RBP2.96□□□□□ -1.94
USP4-209ENST00000475873 TBC1D26Q86UD7 250 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 SNX29P2Q8IUI4 249 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 DHRSXQ8N5I4 330 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 PACRGLQ8N7B6 248 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 OR51S1Q8NGJ8 323 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 OR52I2Q8NH67 350 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 NPIPB3Q92617 1050 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 CNBD2Q96M20 576 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 VGLL1Q99990 258 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 PBDC1Q9BVG4 233 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 KRTAP4-1Q9BYQ7 146 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 DAZ3Q9NR90 486 aaKnown RBP2.96□□□□□ -1.94
USP4-209ENST00000475873 PSORS1C1Q9UIG5 152 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 ANXA10Q9UJ72 324 aa2.96□□□□□ -1.94
USP4-209ENST00000475873 A0A087X0K7 114 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 KRTAP4-8A0A0G2JLE6 195 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 K7EN84 100 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 CORTO00230 105 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 SLC17A3O00476 420 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 PPP1R2P9O14990 202 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 ATG12O94817 140 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 IFNA7P01567 189 aa2.95□□□□□ -1.94
USP4-209ENST00000475873 SNRPCP09234 159 aaKnown RBP2.95□□□□□ -1.94
USP4-209ENST00000475873 HIST1H1EP10412 219 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms