RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 ZNF492Q9P255 531 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 PMS2P5A8MQ11 134 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 PAX1P15863 534 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 SLC50A1Q9BRV3 221 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 TANC2Q9HCD6 1990 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 EPG5Q9HCE0 2579 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 HIST2H2BCQ6DN03 193 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 ZC2HC1BQ5TFG8 222 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 C11orf71Q6IPW1 123 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 C1QTNF4Q9BXJ3 329 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 EDA2RQ9HAV5 297 aa6.11□□□□□ -1.43
USP54-210ENST00000466048 RAI1Q7Z5J4 1906 aaPredicted RBP6.1□□□□□ -1.43
USP54-210ENST00000466048 C19orf84I3L1E1 186 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 TOMM40O96008 361 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 IGHV3-11P01762 117 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 UTF1Q5T230 341 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 GTSCR1Q86UQ5 136 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 GGTLC3B5MD39 225 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 ZNF688P0C7X2 276 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 IFI27P40305 119 aaPredicted RBP6.1□□□□□ -1.43
USP54-210ENST00000466048 RUSC1-AS1Q66K80 236 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 FAM159AQ6UWV7 190 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 NEGR1Q7Z3B1 354 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 CITED2Q99967 270 aaPredicted RBP6.1□□□□□ -1.43
USP54-210ENST00000466048 DUSP14O95147 198 aaKnown RBP6.1□□□□□ -1.43
USP54-210ENST00000466048 GAGE2AQ6NT46 116 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 LYPD1Q8N2G4 141 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 SIGLEC9Q9Y336 463 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 TRAV3A0A0B4J244 114 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 HTN1P15515 57 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 LINC00205P59089 165 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 SUMO2P61956 95 aaKnown RBP6.1□□□□□ -1.43
USP54-210ENST00000466048 LY6G5BQ8NDX9 201 aa6.1□□□□□ -1.43
USP54-210ENST00000466048 H3BMM0 161 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 CNTFRP26992 372 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 SVIPQ8NHG7 77 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 C11orf52Q96A22 123 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 UBE2WQ96B02 151 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 NDUFA4L2Q9NRX3 87 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 VCANP13611 3396 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 IGHV3-35A0A0C4DH35 117 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 TRBV7-9A0A0J9YWB2 115 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 UBE2L6O14933 153 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 ZNF56Q15929 161 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 FAM120AOSQ5T036 256 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 SPATA31B1PQ5VZV4 182 aa6.09□□□□□ -1.43
USP54-210ENST00000466048 FAM110DQ8TAY7 271 aaPredicted RBP6.09□□□□□ -1.43
USP54-210ENST00000466048 ABCA1O95477 2261 aa6.09□□□□□ -1.44
USP54-210ENST00000466048 C9JAW5 83 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 LINC00527Q9UJ94 153 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 ZFYVE26Q68DK2 2539 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 C22orf46C9J442 243 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 D6R8Y8 96 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 J3KRW8 73 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 TRACP01848 142 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 IGKV1-16P04430 117 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 PAX8Q06710 450 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 PRR14LQ5THK1 2151 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 IGLV1-47P01700 117 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 TCRAP04437 139 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 SFTA2Q6UW10 78 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 WIPF2Q8TF74 440 aaPredicted RBP6.08□□□□□ -1.44
USP54-210ENST00000466048 DSCAMO60469 2012 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 USP34Q70CQ2 3546 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 TMEM89A2RUT3 159 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 H3BTX0 84 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 DEFB121Q5J5C9 76 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 CLEC19AQ6UXS0 136 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 DNAJC30Q96LL9 226 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 SIGLEC8Q9NYZ4 499 aa6.08□□□□□ -1.44
USP54-210ENST00000466048 B5MCH6 92 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 RNASE2P10153 161 aaKnown RBP6.07□□□□□ -1.44
USP54-210ENST00000466048 KLF5Q13887 457 aaPredicted RBP6.07□□□□□ -1.44
USP54-210ENST00000466048 ACYP1P07311 99 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 GNG5P63218 68 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 TCTEX1D4Q5JR98 221 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 HOXB4P17483 251 aaPredicted RBP6.07□□□□□ -1.44
USP54-210ENST00000466048 C1orf229Q6ZS94 237 aaPredicted RBP6.07□□□□□ -1.44
USP54-210ENST00000466048 PIP4P2Q8N4L2 257 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 ZNF114Q8NC26 417 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 LSM4Q9Y4Z0 139 aaKnown RBP6.07□□□□□ -1.44
USP54-210ENST00000466048 TNFRSF18Q9Y5U5 241 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 SMIM27A0A1W2PRY6 76 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 M0R381 172 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 OVOL3O00110 214 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 IGHV3-23P01764 117 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 CDPF1Q6NVV7 123 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 KLHL30-AS1Q8NEE0 82 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 SCRT1Q9BWW7 348 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 RFNGQ9Y644 331 aa6.07□□□□□ -1.44
USP54-210ENST00000466048 PLCE1Q9P212 2302 aa6.06□□□□□ -1.44
USP54-210ENST00000466048 SONP18583 2426 aaKnown RBP6.06□□□□□ -1.44
USP54-210ENST00000466048 IGHV3OR16-12A0A075B7B8 117 aa6.06□□□□□ -1.44
USP54-210ENST00000466048 SRRM4A7MD48 611 aaKnown RBP6.06□□□□□ -1.44
USP54-210ENST00000466048 PRSS46E5RG02 174 aa6.06□□□□□ -1.44
USP54-210ENST00000466048 G3V4G9 280 aa6.06□□□□□ -1.44
USP54-210ENST00000466048 IGLC1P0CG04 106 aa6.06□□□□□ -1.44
USP54-210ENST00000466048 PYYP10082 97 aa6.06□□□□□ -1.44
USP54-210ENST00000466048 ZNF726P1Q15940 193 aa6.06□□□□□ -1.44
USP54-210ENST00000466048 RRN3P1Q2M238 152 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms