RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TRGV5A0A0B4J1U4 118 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 IGHV5-51A0A0C4DH38 117 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 IGHV1-58A0A0C4DH39 117 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 LOC101059948A0A1B0GTJ6 334 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 C2orf70A6NJV1 201 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 INS-IGF2F8WCM5 200 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 SSSCA1O60232 199 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 CCL4P13236 92 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 ZNF20P17024 532 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 COL8A2P25067 703 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 MYCNOSP40205 109 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 SSR2P43308 183 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 SNRPGP62308 76 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 SNRPD3P62318 126 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 EBLN2Q6P2I7 272 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 CYP2G1PQ6ZSU1 146 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 SBSPONQ8IVN8 264 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 C6orf223Q8N319 242 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 CLDND2Q8NHS1 167 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 DEFB127Q9H1M4 99 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 CMC2Q9NRP2 79 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 SDK2Q58EX2 2172 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 NBASA2RRP1 2371 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 TRAV2A0A0B4J234 112 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 F2Z2F3 143 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 CPSF4O95639 269 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 IGHV4-30-4P0DP06 118 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 DSCR4P56555 118 aaPredicted RBP3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 SRSF9Q13242 221 aaKnown RBP eCLIP3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 RUSC1-AS1Q66K80 236 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 NOXRED1Q6NXP6 359 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 TSKUQ8WUA8 353 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 OR2A5Q96R48 311 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 GNB4Q9HAV0 340 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 PLEKHA3Q9HB20 300 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 HIGD1BQ9P298 99 aa3.66□□□□□ -1.82
CCDC88A-209ENST00000456975 MED13LQ71F56 2210 aa3.65□□□□□ -1.82
CCDC88A-209ENST00000456975 TRAV41A0A0B4J266 112 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 M0R378 163 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 FFAR1O14842 300 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 APCSP02743 223 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 CXCL5P42830 114 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 WDR38Q5JTN6 314 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 LINC01545Q5VT33 79 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 FAM19A3Q7Z5A8 133 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 CYSTM1Q9H1C7 97 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF71Q9NQZ8 489 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 IL36RNQ9UBH0 155 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 LINC00527Q9UJ94 153 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 UNC13CQ8NB66 2214 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 ITPR3Q14573 2671 aa3.65□□□□□ -1.83
CCDC88A-209ENST00000456975 TRAV9-1A0A075B6T8 112 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 TRAV17A0A0B4J275 112 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 IGKV1-8A0A0C4DH67 115 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 TRBV5-5A0A0J9YX44 114 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 C4orf51C9J302 202 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 INAFM2P0DMQ5 153 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 SS18Q15532 418 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 KRTAP21-3Q3LHN1 58 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 OR5C1Q8NGR4 320 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF721Q8TF20 911 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 C4orf45Q96LM5 186 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 UPK3BQ9BT76 320 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 ESPL1Q14674 2120 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 IGLV1-36A0A0B4J1U3 117 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 IGLV2-14P01704 120 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 MTPNP58546 118 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 RPL23P62829 140 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 ORMDL2Q53FV1 153 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 C10orf25Q5T742 122 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 OR8A1Q8NGG7 326 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 COPS9Q8WXC6 57 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 PGLYRP4Q96LB8 373 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 CHAC1Q9BUX1 264 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 SHANK1Q9Y566 2161 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 F8P00451 2351 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 ITPR2Q14571 2701 aa3.64□□□□□ -1.83
CCDC88A-209ENST00000456975 IRGMA1A4Y4 181 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 HLA-DQA1P01909 254 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 SCGB1C2P0DMR2 95 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 ABCA11PQ4W5N1 156 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 CEMP1Q6PRD7 247 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 MKXQ8IYA7 352 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 Q8N3U1 123 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 IL1F10Q8WWZ1 152 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 ESM1Q9NQ30 184 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 PCSK5Q92824 1860 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 IGKV1D-8A0A087WSZ0 117 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 ATOX1O00244 68 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 CST7O76096 145 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 IGHV4-31P0DP07 118 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF823P16415 610 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 FCGR2CP31995 323 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 EFNA4P52798 201 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF791Q3KP31 576 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 MIC13Q5XKP0 118 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 FAM19A2Q8N3H0 131 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 ZNF563Q8TA94 476 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 LRRC29Q8WV35 223 aa3.63□□□□□ -1.83
CCDC88A-209ENST00000456975 CNRIP1Q96F85 164 aaPredicted RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 1731 ms