RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 MRPL54Q6P161 138 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 HMGN2P46Q86SG4 172 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 DSCAMO60469 2012 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 PAPPA2Q9BXP8 1791 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 CRYBG1Q9Y4K1 1723 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 TRAV7A0A075B6U4 112 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 TRAV3A0A0B4J244 114 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 LOC107984156A0A0G2JMH3 177 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 M0R233 179 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 QRFPP83859 136 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 NCMAPQ5T1S8 102 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 ARL17AQ8IVW1 177 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 OR2T35Q8NGX2 323 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 PFN4Q8NHR9 129 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 MRPS24Q96EL2 167 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 RETNLBQ9BQ08 111 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 MRPL57Q9BQC6 102 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 LINC00467Q9BRT7 94 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 NOP16Q9Y3C1 178 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 MINOS1-NBL1R4GNA1 71 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 PLXND1Q9Y4D7 1925 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 LY75O60449 1722 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 SCN7AQ01118 1682 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 IGKV1D-37A0A075B6S9 117 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 CD14P08571 375 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 BLCAPP62952 87 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 TMEM155Q4W5P6 130 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 LINC00483Q53H64 154 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 RPS19BP1Q86WX3 136 aaKnown RBP1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 RPRMLQ8N4K4 120 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 MYH11P35749 1972 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 TLN2Q9Y4G6 2542 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 CACNA1EQ15878 2313 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 PLXNB3Q9ULL4 1909 aa1.52□□□□□ -2.17
CCDC88A-208ENST00000444458 IGLV3-16A0A075B6K0 115 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 IGHV3-15A0A0B4J1V0 119 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 PNMA8CA0A1B0GUJ8 204 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 LOC100130705A0A1B0GUX0 176 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 KRTAP29-1A8MX34 341 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 FNDC10F2Z333 226 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 CD2P06729 351 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 HIST1H1DP16402 221 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 FXYD2P54710 66 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 ESRGQ1W209 222 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 MRGPRG-AS1Q2M3A8 158 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 C2orf83Q53S99 150 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 COL5A1-AS1Q5SY13 56 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 TMEM91Q6ZNR0 172 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 CLEC2BQ92478 149 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 PSMF1Q92530 271 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 VOPP1Q96AW1 172 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 CST11Q9H112 138 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 NAA60Q9H7X0 242 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 HSPE1-MOB4S4R3N1 261 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 ITSN1Q15811 1721 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 ARID1AO14497 2285 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 NUP210Q8TEM1 1887 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 TRBV10-2A0A0K0K1G8 114 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 C17orf98A8MV24 154 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 LY6LH3BQJ8 138 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 PROSCO94903 275 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 CCL5P13501 91 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 ZNF22P17026 224 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 CSRP1P21291 193 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 ETV6P41212 452 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 NDPQ00604 133 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 HSD52Q0P140 79 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 LINC01545Q5VT33 79 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 C1orf64Q8NEQ6 169 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 MUC7Q8TAX7 377 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 HIGD2AQ9BW72 106 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 SLC35B3Q9H1N7 401 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 RPS10P5Q9NQ39 176 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 HHLA3Q9XRX5 114 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 KTN1Q86UP2 1357 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 TJP1Q07157 1748 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 APOC4-APOC2K7ER74 178 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 KLF7O75840 302 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 APOC2P02655 101 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 CDK6Q00534 326 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 PABPC1L2AQ5JQF8 200 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 FAM27BQ5VT28 67 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 TEN1Q86WV5 123 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 LINC00301Q8NCQ3 95 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 SCRT1Q9BWW7 348 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 SEC11CQ9BY50 192 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 TAS2R8Q9NYW2 309 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 TAS2R4Q9NYW5 299 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 AGRNO00468 2067 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 RIC1Q4ADV7 1423 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 GNRH2O43555 120 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 TRACP01848 142 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 SAA1P0DJI8 122 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 ERHP84090 104 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 SS18Q15532 418 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 C9orf153Q5TBE3 101 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 Q5W150 140 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 ST20-AS1Q8NBB2 130 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 GFRA4Q9GZZ7 299 aa1.51□□□□□ -2.17
CCDC88A-208ENST00000444458 C16orf95Q9H693 158 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms