RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 NEU1Q99519 415 aa16■□□□□ 0.15
PTPRF-207ENST00000436724 NRN1Q9NPD7 142 aa16■□□□□ 0.15
PTPRF-207ENST00000436724 SOCS3O14543 225 aa15.99■□□□□ 0.15
PTPRF-207ENST00000436724 SLURP1P55000 103 aa15.99■□□□□ 0.15
PTPRF-207ENST00000436724 SCGB2A2Q13296 93 aa15.99■□□□□ 0.15
PTPRF-207ENST00000436724 HILS1P60008 231 aa15.99■□□□□ 0.15
PTPRF-207ENST00000436724 DEFB1P60022 68 aa15.99■□□□□ 0.15
PTPRF-207ENST00000436724 Q8N976 141 aa15.99■□□□□ 0.15
PTPRF-207ENST00000436724 HIGD1CA8MV81 97 aa15.98■□□□□ 0.15
PTPRF-207ENST00000436724 EREGO14944 169 aa15.98■□□□□ 0.15
PTPRF-207ENST00000436724 TCF24Q7RTU0 167 aa15.98■□□□□ 0.15
PTPRF-207ENST00000436724 NSD1Q96L73 2696 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-207ENST00000436724 NPIPB6E9PJ23 425 aa15.97■□□□□ 0.15
PTPRF-207ENST00000436724 AMTP48728 403 aa15.97■□□□□ 0.15
PTPRF-207ENST00000436724 OR11H1Q8NG94 326 aa15.97■□□□□ 0.15
PTPRF-207ENST00000436724 C18orf32Q8TCD1 76 aa15.97■□□□□ 0.15
PTPRF-207ENST00000436724 SETXQ7Z333 2677 aaKnown RBP15.97■□□□□ 0.15
PTPRF-207ENST00000436724 LINC01006Q8NI28 216 aa15.97■□□□□ 0.15
PTPRF-207ENST00000436724 GTSF1Q8WW33 167 aa15.97■□□□□ 0.15
PTPRF-207ENST00000436724 AGPAT4-IT1Q9H0P7 198 aa15.97■□□□□ 0.15
PTPRF-207ENST00000436724 INAFM1C9JVW0 142 aa15.96■□□□□ 0.15
PTPRF-207ENST00000436724 ZNF738Q8NE65 137 aa15.96■□□□□ 0.15
PTPRF-207ENST00000436724 KLHL30-AS1Q8NEE0 82 aa15.96■□□□□ 0.15
PTPRF-207ENST00000436724 OR2D3Q8NGH3 330 aa15.96■□□□□ 0.15
PTPRF-207ENST00000436724 C4orf3Q8WVX3 66 aa15.96■□□□□ 0.15
PTPRF-207ENST00000436724 C20orf144Q9BQM9 153 aa15.96■□□□□ 0.15
PTPRF-207ENST00000436724 SNHG12Q9BXW3 62 aa15.96■□□□□ 0.15
PTPRF-207ENST00000436724 A0A1B0GXF2 115 aa15.96■□□□□ 0.14
PTPRF-207ENST00000436724 ZNF324O75467 553 aaPredicted RBP15.96■□□□□ 0.14
PTPRF-207ENST00000436724 CT45A10P0DMU9 189 aa15.96■□□□□ 0.14
PTPRF-207ENST00000436724 PMCHP20382 165 aa15.96■□□□□ 0.14
PTPRF-207ENST00000436724 ZNF80P51504 273 aaPredicted RBP15.96■□□□□ 0.14
PTPRF-207ENST00000436724 SAPCD1Q5SSQ6 148 aa15.96■□□□□ 0.14
PTPRF-207ENST00000436724 NIT1Q86X76 327 aa15.96■□□□□ 0.14
PTPRF-207ENST00000436724 MRPL53Q96EL3 112 aaKnown RBP15.96■□□□□ 0.14
PTPRF-207ENST00000436724 LGALS9O00182 355 aa15.95■□□□□ 0.14
PTPRF-207ENST00000436724 KRTDAPP60985 99 aa15.95■□□□□ 0.14
PTPRF-207ENST00000436724 KLF5Q13887 457 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-207ENST00000436724 SSBP4Q9BWG4 385 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-207ENST00000436724 RBAKDNA6NC62 111 aa15.94■□□□□ 0.14
PTPRF-207ENST00000436724 A8MWL6 223 aa15.94■□□□□ 0.14
PTPRF-207ENST00000436724 WFDC3Q8IUB2 231 aa15.94■□□□□ 0.14
PTPRF-207ENST00000436724 FAM19A2Q8N3H0 131 aa15.94■□□□□ 0.14
PTPRF-207ENST00000436724 HAX1O00165 279 aa15.94■□□□□ 0.14
PTPRF-207ENST00000436724 CAMPP49913 170 aa15.94■□□□□ 0.14
PTPRF-207ENST00000436724 CT83Q5H943 113 aa15.94■□□□□ 0.14
PTPRF-207ENST00000436724 FBLL1A6NHQ2 334 aaKnown RBP15.93■□□□□ 0.14
PTPRF-207ENST00000436724 C2orf70A6NJV1 201 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 LINC01619G3V211 115 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 SH2D1AO60880 128 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 CD28P10747 220 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 SRSF2Q01130 221 aaKnown RBP15.93■□□□□ 0.14
PTPRF-207ENST00000436724 ATP5L2Q7Z4Y8 100 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 ALKBH7Q9BT30 221 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-207ENST00000436724 PAM16Q9Y3D7 125 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 A0A1W2PRX2 142 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 TFPI2P48307 235 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 COX8CQ7Z4L0 72 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 OR1N2Q8NGR9 330 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 DCANP1Q8TF63 244 aa15.93■□□□□ 0.14
PTPRF-207ENST00000436724 F6UB75 175 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 TMEM78Q5T7P6 136 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 ADAMTSL5Q6ZMM2 481 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 DPF1Q92782 380 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 PGLYRP4Q96LB8 373 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 FN1P02751 2386 aaKnown RBP15.92■□□□□ 0.14
PTPRF-207ENST00000436724 RAB4AP20338 218 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 FAM162BQ5T6X4 162 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 OR4B1Q8NGF8 309 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 NDFIP1Q9BT67 221 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 VAMP8Q9BV40 100 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 C16orf95Q9H693 158 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 CLEC5AQ9NY25 188 aa15.92■□□□□ 0.14
PTPRF-207ENST00000436724 TMSB15BA0A087X1C1 80 aa15.91■□□□□ 0.14
PTPRF-207ENST00000436724 PRR31Q5SQ13 230 aa15.91■□□□□ 0.14
PTPRF-207ENST00000436724 C9orf47Q6ZRZ4 202 aa15.91■□□□□ 0.14
PTPRF-207ENST00000436724 MIEN1Q9BRT3 115 aa15.91■□□□□ 0.14
PTPRF-207ENST00000436724 MS4A6AQ9H2W1 248 aa15.91■□□□□ 0.14
PTPRF-207ENST00000436724 M0R143 59 aa15.9■□□□□ 0.14
PTPRF-207ENST00000436724 C3orf79P0CE67 100 aa15.9■□□□□ 0.14
PTPRF-207ENST00000436724 ZNF138P52744 262 aa15.9■□□□□ 0.14
PTPRF-207ENST00000436724 ZNF705AQ6ZN79 300 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-207ENST00000436724 BMI1P35226 326 aa15.9■□□□□ 0.14
PTPRF-207ENST00000436724 DLX4Q92988 240 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-207ENST00000436724 WNK1Q9H4A3 2382 aa15.89■□□□□ 0.13
PTPRF-207ENST00000436724 NTF3P20783 257 aa15.89■□□□□ 0.13
PTPRF-207ENST00000436724 SSTP61278 116 aa15.89■□□□□ 0.13
PTPRF-207ENST00000436724 CITED2Q99967 270 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-207ENST00000436724 NUTF2P61970 127 aaKnown RBP15.89■□□□□ 0.13
PTPRF-207ENST00000436724 HBBP68871 147 aa15.89■□□□□ 0.13
PTPRF-207ENST00000436724 GFRA4Q9GZZ7 299 aa15.89■□□□□ 0.13
PTPRF-207ENST00000436724 RBPMS2Q6ZRY4 209 aaKnown RBP15.88■□□□□ 0.13
PTPRF-207ENST00000436724 SORL1Q92673 2214 aa15.88■□□□□ 0.13
PTPRF-207ENST00000436724 RAX2Q96IS3 184 aa15.87■□□□□ 0.13
PTPRF-207ENST00000436724 CTRLP40313 264 aa15.87■□□□□ 0.13
PTPRF-207ENST00000436724 HIST1H1AQ02539 215 aaPredicted RBP15.87■□□□□ 0.13
PTPRF-207ENST00000436724 Q6ZQT7 251 aa15.87■□□□□ 0.13
PTPRF-207ENST00000436724 OR9G4Q8NGQ1 327 aa15.87■□□□□ 0.13
PTPRF-207ENST00000436724 NIPBLQ6KC79 2804 aaeCLIP15.87■□□□□ 0.13
PTPRF-207ENST00000436724 TMEM189A5PLL7 270 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms