RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PPP1R14DQ9NXH3 145 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 SELENOKQ9Y6D0 94 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 V9GYV3 84 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 AGRNO00468 2067 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 CUBNO60494 3623 aa4.48□□□□□ -1.69
HMGB3-202ENST00000419110 ATRQ13535 2644 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 TRBV24-1A0A075B6N3 115 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 A8MWL6 223 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 OR11H12B2RN74 326 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 PRB4P10163 310 aaPredicted RBP4.47□□□□□ -1.69
HMGB3-202ENST00000419110 TSPOP30536 169 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 TCL1AP56279 114 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 KRTAP10-3P60369 221 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 RPS20P60866 119 aaKnown RBP4.47□□□□□ -1.69
HMGB3-202ENST00000419110 ERCC8Q13216 396 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 ELOBQ15370 118 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 DEFB114Q30KQ6 69 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 KRTAP24-1Q3LI83 254 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 CD300EQ496F6 205 aaPredicted RBP4.47□□□□□ -1.69
HMGB3-202ENST00000419110 C9orf66Q5T8R8 295 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 ADAMTSL5Q6ZMM2 481 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 COX8CQ7Z4L0 72 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 FAM24BQ8N5W8 94 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 OR2D3Q8NGH3 330 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 TSKUQ8WUA8 353 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 FAM210BQ96KR6 192 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 LINC00477Q96M19 166 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 ASCL2Q99929 193 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 MCRIP2Q9BUT9 160 aaKnown RBP4.47□□□□□ -1.69
HMGB3-202ENST00000419110 MAP6D1Q9H9H5 199 aa4.47□□□□□ -1.69
HMGB3-202ENST00000419110 TMA7Q9Y2S6 64 aaKnown RBP4.47□□□□□ -1.69
HMGB3-202ENST00000419110 TGIF2-C20orf24A0A0A6YYL0 155 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 TRAV21A0A0B4J279 112 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 A0A0J9YX75 114 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 TMEM189A5PLL7 270 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 C19orf71A6NCJ1 209 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 F6UB75 175 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 IGLV1-51P01701 117 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 MT-ND6P03923 174 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 S100A8P05109 93 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 PFN1P07737 140 aaKnown RBP4.46□□□□□ -1.7
HMGB3-202ENST00000419110 HLA-DRB4P13762 266 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 CRISP2P16562 243 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 RAB5AP20339 215 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 INSL3P51460 131 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 CMC4P56277 68 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-202ENST00000419110 FAM3BP58499 235 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-202ENST00000419110 DEFB131AP59861 70 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 RAB5BP61020 215 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 COX19Q49B96 90 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 WDR73Q6P4I2 378 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 C12orf54Q6X4T0 127 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 ATP5L2Q7Z4Y8 100 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 NUDT10Q8NFP7 164 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 TMEM158Q8WZ71 300 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 NUDT11Q96G61 164 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 NEU1Q99519 415 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 GFRA4Q9GZZ7 299 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 AGPAT4-IT1Q9H0P7 198 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 SAV1Q9H4B6 383 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-202ENST00000419110 NAT8BQ9UHF3 227 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 NAGKQ9UJ70 344 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 HLA-DRB4X5D2U9 266 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 SORL1Q92673 2214 aa4.46□□□□□ -1.7
HMGB3-202ENST00000419110 SMIM27A0A1W2PRY6 76 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 FAM231BA6NCW3 169 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 IZUMO1RA6ND01 250 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 HIGD1CA8MV81 97 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 C1orf196B1AJZ1 125 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 J3KRW8 73 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 CA1P00915 261 aaPredicted RBP4.45□□□□□ -1.7
HMGB3-202ENST00000419110 INSP01308 110 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 AMBPP02760 352 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 TYMSP04818 313 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 GPX1P07203 203 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 CXCL1P09341 107 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 ZNF705DP0CH99 300 aaPredicted RBP4.45□□□□□ -1.7
HMGB3-202ENST00000419110 ZNF705BP0CI00 300 aaPredicted RBP4.45□□□□□ -1.7
HMGB3-202ENST00000419110 RPS10P46783 165 aaKnown RBP4.45□□□□□ -1.7
HMGB3-202ENST00000419110 ACTL10Q5JWF8 245 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 GTSCR1Q86UQ5 136 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 C3orf56Q8N813 242 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 YPEL4Q96NS1 127 aa4.45□□□□□ -1.7
HMGB3-202ENST00000419110 TMSB15BA0A087X1C1 80 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 A0A1B0GW15 77 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 C7orf71A4D174 169 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 KNCNA6PVL3 124 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 COLCA2A8K830 154 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 FABP5P3A8MUU1 101 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 KLLNB2CW77 178 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 HLA-DQA1P01909 254 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 ORM1P02763 201 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 CTRLP40313 264 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 CDKN1BP46527 198 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 DEFB1P60022 68 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 HBBP68871 147 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 ODF3L2Q3SX64 289 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 PRR9Q5T870 116 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 GDF5OSQ5U4N7 250 aa4.44□□□□□ -1.7
HMGB3-202ENST00000419110 MRPL54Q6P161 138 aaKnown RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms