RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SMKR1H3BMG3 65 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 PRSS1P07477 247 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 EDN2P20800 178 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 CD300EQ496F6 205 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 C9orf139Q6ZV77 190 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 NEXN-AS1Q8NBZ9 246 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 ITLN2Q8WWU7 325 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 C16orf92Q96LL3 132 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 FAM19A4Q96LR4 140 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 FOXC2Q99958 501 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 SMIM2Q9BVW6 85 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 AGPAT4-IT1Q9H0P7 198 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 MSRB1Q9NZV6 116 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 PRO0461Q9UI25 63 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 HILPDAQ9Y5L2 63 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 VPS13AQ96RL7 3174 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 TMSB15BA0A087X1C1 80 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 NCBP2LA6PVI3 153 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 M0QXV9 152 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 ERCC8Q13216 396 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 RRN3P1Q2M238 152 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 C12orf74Q32Q52 190 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 PAPPA-AS1Q5QFB9 102 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 CLEC2AQ6UVW9 174 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 Q8TAT8 98 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 LINC00477Q96M19 166 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 ZDBF2Q9HCK1 2354 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 CLEC3BP05452 202 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 GCSHP23434 173 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 TMEM78Q5T7P6 136 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 AJUBAQ96IF1 538 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 C11orf21Q9P2W6 132 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 IGHV4OR15-8A0A075B7B6 117 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 A0A087WW49 117 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 FAM223BA6NKX1 122 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 UBE2E1P51965 193 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 TNP2Q05952 138 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 C8orf86Q6ZUL3 223 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 FAM223AQ8IWN6 122 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 EEF1AKMT3Q96AZ1 226 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 ZNF479Q96JC4 524 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 CCDC140Q96MF4 163 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 LINC01600Q96MT4 127 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 VCX2Q9H322 139 aa4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 MRPL35Q9NZE8 188 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 TIMM8BQ9Y5J9 83 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-203ENST00000412148 MYMXA0A1B0GTQ4 84 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 H3BUA1 57 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 ARL3P36405 182 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 UBE2D1P51668 147 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 DLX1P56177 255 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 C15orf32Q32M92 178 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 GLMPQ8WWB7 406 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 METTL26Q96S19 204 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 TRAV40A0A0B4J280 105 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 TEX48A0A1B0GUV7 120 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 PRAC2D3DTV9 90 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 OVOL1O14753 267 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 GAS8-AS1O95177 125 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 COX6B1P14854 86 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 SUMO2P61956 95 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 TCTEX1D4Q5JR98 221 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 LYRM7Q5U5X0 104 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 SAMD13Q5VXD3 122 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 MAPKAPK5-AS1Q8N8E1 139 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 RAB37Q96AX2 223 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 C18orf15Q96N68 181 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 SIGMAR1Q99720 223 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 PIMREGQ9BSJ6 248 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 DPH3P1Q9H4G8 78 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 ZNF580Q9UK33 172 aa4.38□□□□□ -1.71
CCDC88A-203ENST00000412148 H3BMG7 143 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 SOCS3O14543 225 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 TRGV3P03979 118 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 HLA-DMBP28068 263 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 HES1Q14469 280 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 GTSCR1Q86UQ5 136 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 SBSPONQ8IVN8 264 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 NHP2Q9NX24 153 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 ZNF318Q5VUA4 2279 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 TRAV21A0A0B4J279 112 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 OR11H12B2RN74 326 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 LYNX1G3V0Z9 82 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 K7ENP7 123 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 LYNX1P0DP58 116 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 OR11H1Q8NG94 326 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 OR11H2Q8NH07 326 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 ICE1Q9Y2F5 2266 aa4.37□□□□□ -1.71
CCDC88A-203ENST00000412148 GAGE12HA6NDE8 117 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 RIPPLY3P57055 190 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 FXYD7P58549 80 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 UBE2D3P61077 147 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 UBE2D2P62837 147 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 KLRD1Q13241 179 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 MORN3Q6PF18 240 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 ZFAND2AQ8N6M9 145 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 RASL10AQ92737 203 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 NDUFA4O00483 81 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 LGALS1P09382 135 aaKnown RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms