RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TRBV25-1A0A075B6N4 114 aa10.22□□□□□ -0.77
PTPRN-202ENST00000409251 NEGR1Q7Z3B1 354 aa10.22□□□□□ -0.77
PTPRN-202ENST00000409251 HLA-DMBP28068 263 aa10.21□□□□□ -0.77
PTPRN-202ENST00000409251 APOBEC3AP31941 199 aaPredicted RBP10.21□□□□□ -0.77
PTPRN-202ENST00000409251 TMEM158Q8WZ71 300 aa10.21□□□□□ -0.77
PTPRN-202ENST00000409251 RAI1Q7Z5J4 1906 aaPredicted RBP10.21□□□□□ -0.77
PTPRN-202ENST00000409251 EFNA4P52798 201 aa10.21□□□□□ -0.77
PTPRN-202ENST00000409251 UCNP55089 124 aa10.21□□□□□ -0.78
PTPRN-202ENST00000409251 OSR1Q8TAX0 266 aaPredicted RBP10.21□□□□□ -0.78
PTPRN-202ENST00000409251 C7orf69Q9H7B7 122 aa10.21□□□□□ -0.78
PTPRN-202ENST00000409251 C19orf71A6NCJ1 209 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 MLST8Q9BVC4 326 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 SOX21Q9Y651 276 aaPredicted RBP10.2□□□□□ -0.78
PTPRN-202ENST00000409251 IGKV3-7A0A075B6H7 116 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 HAX1O00165 279 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 MAP1LC3AQ9H492 121 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 A0A096LNJ9 63 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 SCGB2A1O75556 95 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 IGKCP01834 107 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 PIP4P2Q8N4L2 257 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 TTC9CQ8N5M4 171 aa10.2□□□□□ -0.78
PTPRN-202ENST00000409251 MRPL35Q9NZE8 188 aaKnown RBP10.2□□□□□ -0.78
PTPRN-202ENST00000409251 PRSS22Q9GZN4 317 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 A0A1W2PPR1 153 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 SH2D1AO60880 128 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 NUP37Q8NFH4 326 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 RPEQ96AT9 228 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 PGPEP1Q9NXJ5 209 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 GP9P14770 177 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 KLRD1Q13241 179 aa10.19□□□□□ -0.78
PTPRN-202ENST00000409251 ZNF672Q499Z4 452 aaPredicted RBP10.19□□□□□ -0.78
PTPRN-202ENST00000409251 IGHV3OR16-10A0A075B7F0 116 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 C19orf84I3L1E1 186 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 PRTN3P24158 256 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 FAM104BQ5XKR9 115 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 C8orf46Q8TAG6 207 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 OTORQ9NRC9 128 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 DOPEY1Q5JWR5 2465 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 CHD6Q8TD26 2715 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 GATA3P23771 443 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 BEX4Q9NWD9 120 aaPredicted RBP10.18□□□□□ -0.78
PTPRN-202ENST00000409251 FASNP49327 2511 aaKnown RBP10.18□□□□□ -0.78
PTPRN-202ENST00000409251 RPL7P18124 248 aaKnown RBP10.18□□□□□ -0.78
PTPRN-202ENST00000409251 CRIP1P50238 77 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 C3orf56Q8N813 242 aa10.18□□□□□ -0.78
PTPRN-202ENST00000409251 LGALS9BQ3B8N2 356 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 LGALS9CQ6DKI2 356 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 MYOZ3Q8TDC0 251 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 NCBP2LA6PVI3 153 aaKnown RBP10.17□□□□□ -0.78
PTPRN-202ENST00000409251 IGLL5B9A064 214 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 MT-ATP8P03928 68 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 ERCC8Q13216 396 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 MAPKAPK5-AS1Q8N8E1 139 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 NRGNQ92686 78 aa10.17□□□□□ -0.78
PTPRN-202ENST00000409251 GATA4P43694 442 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 TRBV20-1A0A075B6N2 111 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 B5MCH6 92 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 SPANXB1Q9NS25 103 aaPredicted RBP10.16□□□□□ -0.78
PTPRN-202ENST00000409251 ZNF492Q9P255 531 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 ACANP16112 2415 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 ZNF785A8K8V0 405 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 C12orf74Q32Q52 190 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.16□□□□□ -0.78
PTPRN-202ENST00000409251 ANAPC13Q9BS18 74 aa10.16□□□□□ -0.78
PTPRN-202ENST00000409251 B9A039 149 aa10.15□□□□□ -0.78
PTPRN-202ENST00000409251 DPM2O94777 84 aa10.15□□□□□ -0.78
PTPRN-202ENST00000409251 LOXP28300 417 aaPredicted RBP10.15□□□□□ -0.78
PTPRN-202ENST00000409251 CEND1Q8N111 149 aa10.15□□□□□ -0.78
PTPRN-202ENST00000409251 LINC01549A6NIU2 74 aa10.15□□□□□ -0.79
PTPRN-202ENST00000409251 OR11H12B2RN74 326 aa10.15□□□□□ -0.79
PTPRN-202ENST00000409251 EGR2P11161 476 aaPredicted RBP10.15□□□□□ -0.79
PTPRN-202ENST00000409251 MC5RP33032 325 aa10.15□□□□□ -0.79
PTPRN-202ENST00000409251 OR11H1Q8NG94 326 aa10.15□□□□□ -0.79
PTPRN-202ENST00000409251 OR11H2Q8NH07 326 aa10.15□□□□□ -0.79
PTPRN-202ENST00000409251 KLF12Q9Y4X4 402 aa10.15□□□□□ -0.79
PTPRN-202ENST00000409251 SMIM17P0DL12 118 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 HLA-DRB4P13762 266 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 HLA-DRB4X5D2U9 266 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 RNF183Q96D59 192 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 GFRA4Q9GZZ7 299 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 TNFRSF6BO95407 300 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 Q1RN00 199 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 CT83Q5H943 113 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 SPANXN1Q5VSR9 72 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 FOXI2Q6ZQN5 318 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 RNF182Q8N6D2 247 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 TMEM167AQ8TBQ9 72 aa10.14□□□□□ -0.79
PTPRN-202ENST00000409251 M0R381 172 aa10.13□□□□□ -0.79
PTPRN-202ENST00000409251 MGPP08493 103 aa10.13□□□□□ -0.79
PTPRN-202ENST00000409251 RNF125Q96EQ8 232 aa10.13□□□□□ -0.79
PTPRN-202ENST00000409251 LINC00312Q9Y6C7 94 aa10.13□□□□□ -0.79
PTPRN-202ENST00000409251 MYCNOSP40205 109 aa10.13□□□□□ -0.79
PTPRN-202ENST00000409251 MTORP42345 2549 aa10.13□□□□□ -0.79
PTPRN-202ENST00000409251 KIR2DL4Q99706 377 aa10.13□□□□□ -0.79
PTPRN-202ENST00000409251 ANKRD17O75179 2603 aaKnown RBP10.13□□□□□ -0.79
PTPRN-202ENST00000409251 TRBV19A0A075B6N1 114 aa10.12□□□□□ -0.79
PTPRN-202ENST00000409251 IGHV3-64A0A075B6Q5 118 aa10.12□□□□□ -0.79
PTPRN-202ENST00000409251 IGLV2-11P01706 119 aa10.12□□□□□ -0.79
PTPRN-202ENST00000409251 CGB3P0DN86 165 aa10.12□□□□□ -0.79
PTPRN-202ENST00000409251 CGB7P0DN87 165 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms