RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 OR10AG1Q8NH19 301 aa7.53□□□□□ -1.2
COL6A3-204ENST00000392003 IGHV4-39P01824 125 aa7.52□□□□□ -1.21
COL6A3-204ENST00000392003 SAA4P35542 130 aa7.52□□□□□ -1.21
COL6A3-204ENST00000392003 FAM110DQ8TAY7 271 aaPredicted RBP7.52□□□□□ -1.21
COL6A3-204ENST00000392003 CHCHD1Q96BP2 118 aaKnown RBP7.52□□□□□ -1.21
COL6A3-204ENST00000392003 LOC107984640A0A0U1RRK4 108 aa7.52□□□□□ -1.21
COL6A3-204ENST00000392003 TMEM189A5PLL7 270 aa7.52□□□□□ -1.21
COL6A3-204ENST00000392003 FAM181BA6NEQ2 426 aa7.52□□□□□ -1.21
COL6A3-204ENST00000392003 ZNF785A8K8V0 405 aa7.52□□□□□ -1.21
COL6A3-204ENST00000392003 MRPS12O15235 138 aaKnown RBP7.52□□□□□ -1.21
COL6A3-204ENST00000392003 USP9XQ93008 2570 aaPredicted RBP7.52□□□□□ -1.21
COL6A3-204ENST00000392003 TRBV20-1A0A075B6N2 111 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 SH2D7A6NKC9 451 aaPredicted RBP7.51□□□□□ -1.21
COL6A3-204ENST00000392003 GPR183P32249 361 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 FAM120AOSQ5T036 256 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 SMG1Q96Q15 3661 aaKnown RBP7.51□□□□□ -1.21
COL6A3-204ENST00000392003 IGSF10Q6WRI0 2623 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 CTSGP08311 255 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 PRB4P10163 310 aaPredicted RBP7.51□□□□□ -1.21
COL6A3-204ENST00000392003 COX6B1P14854 86 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 XGP55808 180 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 ETDBQ3ZM63 59 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 ASCL2Q99929 193 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 MCRIP2Q9BUT9 160 aaKnown RBP7.51□□□□□ -1.21
COL6A3-204ENST00000392003 TM2D2Q9BX73 214 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 USP9YO00507 2555 aaPredicted RBP7.51□□□□□ -1.21
COL6A3-204ENST00000392003 TACC2O95359 2948 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 IGHV3-35A0A0C4DH35 117 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 A0A0G2JLM5 398 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 NPFFO15130 113 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 FHL3Q13643 280 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 C15orf32Q32M92 178 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 C12orf54Q6X4T0 127 aa7.51□□□□□ -1.21
COL6A3-204ENST00000392003 C9orf118A6NHY6 69 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 ARMS2P0C7Q2 107 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 LMO4P61968 165 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 BCL6BQ8N143 479 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-204ENST00000392003 TMEM70Q9BUB7 260 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 SPANXB1Q9NS25 103 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-204ENST00000392003 CFAP46Q8IYW2 2715 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 IGKV2-40A0A087WW87 121 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-204ENST00000392003 TMSB15BA0A087X1C1 80 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 SMIM9A6NGZ8 99 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 F8W735 103 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-204ENST00000392003 LEPROTL1O95214 131 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 IGKV2D-40P01614 121 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-204ENST00000392003 ST20Q9HBF5 79 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 CSPG4Q6UVK1 2322 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 IGHV3OR16-8A0A075B7F1 116 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 ATP6V0E1O15342 81 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 CSN3P07498 182 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 EGR2P11161 476 aaPredicted RBP7.5□□□□□ -1.21
COL6A3-204ENST00000392003 PET117Q6UWS5 81 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 EEF1AKMT3Q96AZ1 226 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 C8orf49Q96NF6 230 aa7.5□□□□□ -1.21
COL6A3-204ENST00000392003 MAP1AP78559 2803 aaPredicted RBP7.49□□□□□ -1.21
COL6A3-204ENST00000392003 FABP5P3A8MUU1 101 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 OR5AL1P0C617 328 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 EBLN2Q6P2I7 272 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 FOXI2Q6ZQN5 318 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 C18orf15Q96N68 181 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 CDIP1Q9H305 208 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 FA2HQ7L5A8 372 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 ZNF502Q8TBZ5 544 aa7.49□□□□□ -1.21
COL6A3-204ENST00000392003 TIMM8BQ9Y5J9 83 aaPredicted RBP7.49□□□□□ -1.21
COL6A3-204ENST00000392003 SH2D1AO60880 128 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 PRSS3P2Q8NHM4 247 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 FLNCQ14315 2725 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 CENPEQ02224 2701 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 IGHV4-61A0A0C4DH41 118 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 PPIFP30405 207 aaKnown RBP7.48□□□□□ -1.21
COL6A3-204ENST00000392003 SRSF2Q01130 221 aaKnown RBP7.48□□□□□ -1.21
COL6A3-204ENST00000392003 CLEC19AQ6UXS0 136 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 COL12A1Q99715 3063 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 CENPVL3A0A0U1RRI6 287 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 BRD3OSQ6XYD6 125 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 Q71RC1 249 aaPredicted RBP7.48□□□□□ -1.21
COL6A3-204ENST00000392003 PRR25Q96S07 402 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 KIR2DL4Q99706 377 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 MAP1LC3CQ9BXW4 147 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 PTPN13Q12923 2485 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 POLQO75417 2590 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 NAV2Q8IVL1 2488 aa7.48□□□□□ -1.21
COL6A3-204ENST00000392003 OVOL3O00110 214 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 APOHP02749 345 aaPredicted RBP7.47□□□□□ -1.21
COL6A3-204ENST00000392003 CRIP1P50238 77 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 LYZL1Q6UWQ5 148 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 SYT8Q8NBV8 401 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 NRGNQ92686 78 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 TMEM191AQ9H0A3 160 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 TRAV40A0A0B4J280 105 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 IGHV1-24A0A0C4DH33 117 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 TCTAP57738 103 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 SLC25A34Q6PIV7 304 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 METTL26Q96S19 204 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 SLC50A1Q9BRV3 221 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 AP5S1Q9NUS5 200 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 USP24Q9UPU5 2620 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 TRBV7-1A0A0A6YYK4 115 aa7.47□□□□□ -1.21
COL6A3-204ENST00000392003 A0A1W2PPM0 123 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms