RNA–Protein interactions for RNA: ENST00000331920.10

PTCH1-201, Transcript of patched 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTCH1, Length 8,057 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-201ENST00000331920 IGHV3-30-3P0DP02 117 aa13.19□□□□□ -0.3
PTCH1-201ENST00000331920 IGHV3-30-5P0DP03 117 aa13.19□□□□□ -0.3
PTCH1-201ENST00000331920 NTN5Q8WTR8 489 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-201ENST00000331920 IGLL5B9A064 214 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 ETV2O00321 342 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-201ENST00000331920 NREPQ16612 68 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 TRAV4A0A0B4J268 109 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 NCR3O14931 201 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 BVES-AS1Q5T3Y7 98 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 CFHR1Q03591 330 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 GAFA1Q96PS6 74 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 Q0VFX4 171 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 MRPL35Q9NZE8 188 aaKnown RBP13.18□□□□□ -0.3
PTCH1-201ENST00000331920 PRSS46E5RG02 174 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 NPSP0C0P6 89 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 GFRA4Q9GZZ7 299 aa13.18□□□□□ -0.3
PTCH1-201ENST00000331920 IGLV3-21P80748 117 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-201ENST00000331920 G3V318 75 aa13.17□□□□□ -0.3
PTCH1-201ENST00000331920 Q9H8V8 135 aa13.17□□□□□ -0.3
PTCH1-201ENST00000331920 CNOT1A5YKK6 2376 aaKnown RBP13.17□□□□□ -0.3
PTCH1-201ENST00000331920 K7EP34 96 aa13.17□□□□□ -0.3
PTCH1-201ENST00000331920 TM2D2Q9BX73 214 aa13.17□□□□□ -0.3
PTCH1-201ENST00000331920 J3QQQ9 107 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 K7EMI3 77 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 SRRM5B3KS81 715 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 SHANK2-AS3Q9BTD1 123 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 RLFQ13129 1914 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 CAMK2N2Q96S95 79 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 IGKV1-12A0A0C4DH73 117 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 IGKV1D-12P01611 117 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 IGKV1-27A0A075B6S5 117 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 SP5Q6BEB4 398 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-201ENST00000331920 SMIM20Q8N5G0 67 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 SPANXDQ9BXN6 97 aa13.16□□□□□ -0.3
PTCH1-201ENST00000331920 LRCOL1A6NCL2 159 aa13.15□□□□□ -0.3
PTCH1-201ENST00000331920 DYNAPQ8N1N2 210 aa13.15□□□□□ -0.3
PTCH1-201ENST00000331920 MSMBP08118 114 aa13.15□□□□□ -0.3
PTCH1-201ENST00000331920 WDR86Q86TI4 376 aa13.15□□□□□ -0.3
PTCH1-201ENST00000331920 ZNF134P52741 427 aa13.15□□□□□ -0.3
PTCH1-201ENST00000331920 CYYR1Q96J86 154 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 ADAMTSL3P82987 1691 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 ESM1Q9NQ30 184 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 MED13Q9UHV7 2174 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 OOSP1A8MZH6 123 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 IFI6P09912 130 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 ARTNQ5T4W7 220 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 FGF16O43320 207 aa13.14□□□□□ -0.31
PTCH1-201ENST00000331920 MARF1Q9Y4F3 1742 aaKnown RBP13.14□□□□□ -0.31
PTCH1-201ENST00000331920 PDE6HQ13956 83 aa13.13□□□□□ -0.31
PTCH1-201ENST00000331920 C15orf62A8K5M9 175 aa13.13□□□□□ -0.31
PTCH1-201ENST00000331920 ACACAQ13085 2346 aa13.13□□□□□ -0.31
PTCH1-201ENST00000331920 FANCD2OSQ96PS1 177 aa13.13□□□□□ -0.31
PTCH1-201ENST00000331920 KLF2Q9Y5W3 355 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-201ENST00000331920 BRCA1P38398 1863 aaKnown RBP13.13□□□□□ -0.31
PTCH1-201ENST00000331920 K7ERS5 55 aa13.13□□□□□ -0.31
PTCH1-201ENST00000331920 NTN3O00634 580 aaPredicted RBP13.13□□□□□ -0.31
PTCH1-201ENST00000331920 C18orf32Q8TCD1 76 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 MLST8Q9BVC4 326 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 FAM236AA0A1B0GUQ0 79 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 FAM236BA0A1B0GV22 79 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 HIGD2BQ4VC39 106 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 SIGLEC8Q9NYZ4 499 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 RNF5Q99942 180 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 KLHDC3Q9BQ90 382 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 SLC25A29Q8N8R3 303 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 LCTP09848 1927 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 HIST2H2BCQ6DN03 193 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 GREB1LQ9C091 1923 aaPredicted RBP13.12□□□□□ -0.31
PTCH1-201ENST00000331920 ZFP2Q6ZN57 461 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 U3KQE9 123 aa13.12□□□□□ -0.31
PTCH1-201ENST00000331920 COX8AP10176 69 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 NPBQ8NG41 125 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 DKK2Q9UBU2 259 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 FREM1Q5H8C1 2179 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 TMEM105Q8N8V8 129 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 UBR3Q6ZT12 1888 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 A0A0U1RQV1 116 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 NDUFB8O95169 186 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-201ENST00000331920 MESP1Q9BRJ9 268 aa13.11□□□□□ -0.31
PTCH1-201ENST00000331920 F8W735 103 aaPredicted RBP13.1□□□□□ -0.31
PTCH1-201ENST00000331920 IGHV4-59P01825 116 aa13.1□□□□□ -0.31
PTCH1-201ENST00000331920 C12orf74Q32Q52 190 aa13.1□□□□□ -0.31
PTCH1-201ENST00000331920 MED13LQ71F56 2210 aa13.1□□□□□ -0.31
PTCH1-201ENST00000331920 TRAV1-1A0A0B4J248 108 aa13.1□□□□□ -0.31
PTCH1-201ENST00000331920 TMEM190Q8WZ59 177 aa13.1□□□□□ -0.31
PTCH1-201ENST00000331920 MRPL36Q9P0J6 103 aaKnown RBP13.1□□□□□ -0.31
PTCH1-201ENST00000331920 WNK1Q9H4A3 2382 aa13.1□□□□□ -0.31
PTCH1-201ENST00000331920 F8VRH5 84 aa13.1□□□□□ -0.31
PTCH1-201ENST00000331920 TMEM14EPQ6UXP3 125 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 ZNF883P0CG24 379 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 RHOHQ15669 191 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 GLI3P10071 1580 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 LY96Q9Y6Y9 160 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 IGKV1D-17A0A075B6S4 117 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 ZNF581Q9P0T4 197 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 GNRH2O43555 120 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 MRPL53Q96EL3 112 aaKnown RBP13.09□□□□□ -0.31
PTCH1-201ENST00000331920 PKIGQ9Y2B9 76 aa13.09□□□□□ -0.31
PTCH1-201ENST00000331920 CCL25O15444 150 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms