RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 KIAA1551Q9HCM1 1747 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 KIAA1549LQ6ZVL6 1849 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 COX6A1P12074 109 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 GNG5P63218 68 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 ZFP2Q6ZN57 461 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 IGF2BP2-AS1Q96M15 143 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 GFRA4Q9GZZ7 299 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 RAI1Q7Z5J4 1906 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-212ENST00000636194 TRBV5-3A0A0A0MS03 114 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 H3BUX3 64 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 MSRB2Q9Y3D2 182 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 PMS2P5A8MQ11 134 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 NDUFB8O95169 186 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 FGF6P10767 208 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF329Q86UD4 541 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 MRPS18CQ9Y3D5 142 aaKnown RBP4.93□□□□□ -1.62
SCN1A-212ENST00000636194 IGKV2-40A0A087WW87 121 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-212ENST00000636194 IGKV2D-40P01614 121 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-212ENST00000636194 EFNB3Q15768 340 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 C1QTNF5Q9BXJ0 243 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 PLA2G2FQ9BZM2 168 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 J3QLI3 93 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 CISD3P0C7P0 127 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 C1orf100Q5SVJ3 147 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 TEX36Q5VZQ5 186 aa4.93□□□□□ -1.62
SCN1A-212ENST00000636194 MST1LQ2TV78 715 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 CLPSL2Q6UWE3 100 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 DEFB104AQ8WTQ1 72 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 IGHV2-26A0A0B4J1V2 119 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 FAM240AA0A1B0GVK7 77 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 EFNA2O43921 213 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 PRO1854Q9UHT4 67 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 K7EMI3 77 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 RPL34P49207 117 aaKnown RBP4.92□□□□□ -1.62
SCN1A-212ENST00000636194 TMEM219Q86XT9 240 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 ATP6V0BQ99437 205 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 TMEM242Q9NWH2 141 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 MORN2Q502X0 79 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 PKD1L2Q7Z442 2459 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 TRAV23DV6A0A075B6W5 121 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 C12orf77C9JDV5 145 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 PCP2Q8IVA1 136 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 CARD19Q96LW7 228 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 TSSC4Q9Y5U2 329 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-212ENST00000636194 DLEU1O43261 78 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 UBE2D1P51668 147 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF497Q6ZNH5 498 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 C1QL2Q7Z5L3 287 aa4.92□□□□□ -1.62
SCN1A-212ENST00000636194 OPRPNQ99935 248 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-212ENST00000636194 NPDC1Q9NQX5 325 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-212ENST00000636194 A0A087WWL8 130 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 SLC25A29Q8N8R3 303 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 RNF185Q96GF1 192 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 IGHV4-59P01825 116 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 FAM110DQ8TAY7 271 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-212ENST00000636194 A0A1B0GUS0 222 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 A0A1W2PR77 199 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 LRCOL1A6NCL2 159 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 NMBP08949 121 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 CD177Q8N6Q3 437 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 TM2D1Q9BX74 207 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 TP53TG1Q9Y2A0 90 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 A0A087X0K7 114 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 PATE3B3GLJ2 98 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 FAM27E3Q08E93 113 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 TMEM75Q8N9X5 138 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 HIST1H2BLQ99880 126 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 IGHV1OR15-1A0A075B7D0 117 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 FAM216BQ8N7L0 139 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 UPK3BQ9BT76 320 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.91□□□□□ -1.62
SCN1A-212ENST00000636194 ADAMTSL1Q8N6G6 1762 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 C5orf67F2Z3F1 127 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 H0YGX0 51 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 ZNF493Q6ZR52 646 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 ICOSQ9Y6W8 199 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 CAMK2N2Q96S95 79 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 RHPN1-AS1Q9BWJ2 59 aa4.91□□□□□ -1.62
SCN1A-212ENST00000636194 MRPL27Q9P0M9 148 aaKnown RBP4.91□□□□□ -1.62
SCN1A-212ENST00000636194 AHDC1Q5TGY3 1603 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-212ENST00000636194 A0A0G2JK05 382 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 CXCL2P19875 107 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 MRPL23Q16540 153 aaKnown RBP4.9□□□□□ -1.62
SCN1A-212ENST00000636194 TEN1Q86WV5 123 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 SIGLEC9Q9Y336 463 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 HRKO00198 91 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 SRXN1Q9BYN0 137 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 C17orf98A8MV24 154 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 SH2D1AO60880 128 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 RAMP3O60896 148 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 CXCL5P42830 114 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 XCL1P47992 114 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 CDCP2Q5VXM1 449 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 SAP25Q8TEE9 199 aa4.9□□□□□ -1.62
SCN1A-212ENST00000636194 A0A0U1RQV1 116 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 TRBV12-3P01733 135 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 LIMS1P48059 325 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 UBE2V1Q13404 147 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 C9orf66Q5T8R8 295 aa4.9□□□□□ -1.63
SCN1A-212ENST00000636194 LAIR2Q6ISS4 152 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms