RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 HIST1H1EP10412 219 aaKnown RBP-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 FXYD3Q14802 87 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 RRN3P1Q2M238 152 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 LYRM7Q5U5X0 104 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 IDO2Q6ZQW0 420 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 C5orf56Q8N8D9 126 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 C5orf17Q8NAS9 161 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 POPDC3Q9HBV1 291 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 CTTNBP2Q8WZ74 1663 aa-1.51□□□□□ -2.65
SCN1A-211ENST00000635893 CFAP46Q8IYW2 2715 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 MYLKQ15746 1914 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 NBDYA0A0U1RRE5 68 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 hDV103S1A0JD37 113 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 CALB1P05937 261 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 C8GP07360 202 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 HLA-EP13747 358 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 WFDC2Q14508 124 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 FAM151BQ6UXP7 276 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 FAM9CQ8IZT9 166 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 OR4K15Q8NH41 348 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 PTH2Q96A98 100 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 NAT8BQ9UHF3 227 aa-1.52□□□□□ -2.65
SCN1A-211ENST00000635893 RELNP78509 3460 aa-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 A0A096LNT2 108 aa-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 DUXBA0A1W2PPF3 345 aa-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 KPNA3O00505 521 aaPredicted RBP-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 UNC13BO14795 1591 aa-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 PIGPP57054 158 aa-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 BCL2L15Q5TBC7 163 aa-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 OR6V1Q8N148 313 aa-1.53□□□□□ -2.65
SCN1A-211ENST00000635893 KALRNO60229 2985 aa-1.53□□□□□ -2.66
SCN1A-211ENST00000635893 CHD7Q9P2D1 2997 aa-1.53□□□□□ -2.66
SCN1A-211ENST00000635893 DSPPQ9NZW4 1301 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 A0A0A6YYH2 397 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 A6NJ64 397 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 TMEM256-PLSCR3K7ERE1 68 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 TAX1BP3O14907 124 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 UBE2BP63146 152 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 IAH1Q2TAA2 248 aaPredicted RBP-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 GLTPQ9NZD2 209 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 USF3Q68DE3 2245 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 EYSQ5T1H1 3165 aa-1.54□□□□□ -2.66
SCN1A-211ENST00000635893 LOC101927531A0A1B0GV80 90 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 FAM159BA6NKW6 160 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 K7EQZ3 153 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 M0R2T5 61 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 SULT1A1P50225 295 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 DYNLT3P51808 116 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 KRTAP20-1Q3LI63 56 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 Q5VSD8 79 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 ZHX1-C8orf76Q96EF9 292 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 CMSS1Q9BQ75 279 aaKnown RBP-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 USE1Q9NZ43 259 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 VPS29Q9UBQ0 182 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 KNL1Q8NG31 2342 aa-1.55□□□□□ -2.66
SCN1A-211ENST00000635893 CST8O60676 142 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 MT1AP04731 61 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 SPRR1AP35321 89 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 AESQ08117 197 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 Q8IZM0 81 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 NAT14Q8WUY8 206 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 PRR15LQ9BU68 103 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 DNAH5Q8TE73 4624 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 IQSEC2Q5JU85 1478 aa-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 SMG1Q96Q15 3661 aaKnown RBP-1.56□□□□□ -2.66
SCN1A-211ENST00000635893 PLCE1Q9P212 2302 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 ZZEF1O43149 2961 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 BIVM-ERCC5R4GMW8 1640 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 CLDN24A6NM45 220 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 PIAS1O75925 651 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 MT1HP80294 61 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 DIAPH2-AS1Q14236 149 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 NEDD8Q15843 81 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 IMPG1Q17R60 797 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 CLDN22Q8N7P3 220 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 BORCS7Q96B45 105 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 ARL5BQ96KC2 179 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 MRPS26Q9BYN8 205 aaKnown RBP-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 NUP98P52948 1817 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 SNAPC4Q5SXM2 1469 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 SOGA1O94964 1423 aa-1.57□□□□□ -2.66
SCN1A-211ENST00000635893 DMXL1Q9Y485 3027 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 A0A087WUJ7 227 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 TRAV4A0A0B4J268 109 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 MPC1LP0DKB6 136 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 SNRPD3P62318 126 aaKnown RBP-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 KLRD1Q13241 179 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 CSAG1Q6PB30 78 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 TEX37Q96LM6 180 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 ZNF714Q96N38 554 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 GUCA1BQ9UMX6 200 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 CEP164Q9UPV0 1460 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 FMN1Q68DA7 1419 aa-1.58□□□□□ -2.66
SCN1A-211ENST00000635893 M0R3E3 92 aa-1.59□□□□□ -2.66
SCN1A-211ENST00000635893 SERPINA6P08185 405 aa-1.59□□□□□ -2.66
SCN1A-211ENST00000635893 IDO1P14902 403 aa-1.59□□□□□ -2.66
SCN1A-211ENST00000635893 SPAG11AQ6PDA7 123 aa-1.59□□□□□ -2.66
SCN1A-211ENST00000635893 DEFB132Q7Z7B7 95 aa-1.59□□□□□ -2.66
SCN1A-211ENST00000635893 CST11Q9H112 138 aa-1.59□□□□□ -2.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms