RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 FAM120AOSQ5T036 256 aa8.26□□□□□ -1.09
ZNF540-208ENST00000589857 RNASEKQ6P5S7 137 aaKnown RBP8.26□□□□□ -1.09
ZNF540-208ENST00000589857 MAPK1IP1LQ8NDC0 245 aa8.26□□□□□ -1.09
ZNF540-208ENST00000589857 ZC2HC1AQ96GY0 325 aa8.26□□□□□ -1.09
ZNF540-208ENST00000589857 SGK494Q96LW2 274 aa8.26□□□□□ -1.09
ZNF540-208ENST00000589857 MEGF9Q9H1U4 602 aa8.26□□□□□ -1.09
ZNF540-208ENST00000589857 MALRD1Q5VYJ5 2156 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 NBEAL1Q6ZS30 2694 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 MXRA5Q9NR99 2828 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 LOC102724200A0A096LPH7 203 aaPredicted RBP8.25□□□□□ -1.09
ZNF540-208ENST00000589857 TRAV8-1A0A0A6YYK1 113 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 TRAV41A0A0B4J266 112 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 SH2D7A6NKC9 451 aaPredicted RBP8.25□□□□□ -1.09
ZNF540-208ENST00000589857 FRMD6-AS1P0C7T7 363 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 GPR183P32249 361 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 GTSF1Q8WW33 167 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 AJUBAQ96IF1 538 aa8.25□□□□□ -1.09
ZNF540-208ENST00000589857 VWC2LB2RUY7 222 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 CLEC3BP05452 202 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 SLC25A16P16260 332 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 SRD5A1P18405 259 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 NTF3P20783 257 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 GDF5OSQ5U4N7 250 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 LINC00322Q6ZN03 302 aaPredicted RBP8.24□□□□□ -1.09
ZNF540-208ENST00000589857 USMG5Q96IX5 58 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 C17orf77Q96MU5 243 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 MIEN1Q9BRT3 115 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 C2orf88Q9BSF0 95 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 S4R3C0 116 aa8.24□□□□□ -1.09
ZNF540-208ENST00000589857 F2Z2F3 143 aa8.23□□□□□ -1.09
ZNF540-208ENST00000589857 M0R143 59 aa8.23□□□□□ -1.09
ZNF540-208ENST00000589857 BTF3P20290 206 aaKnown RBP8.23□□□□□ -1.09
ZNF540-208ENST00000589857 LOXL1Q08397 574 aaPredicted RBP8.23□□□□□ -1.09
ZNF540-208ENST00000589857 ZNF493Q6ZR52 646 aa8.23□□□□□ -1.09
ZNF540-208ENST00000589857 RCHY1Q96PM5 261 aa8.23□□□□□ -1.09
ZNF540-208ENST00000589857 PRR25Q96S07 402 aa8.23□□□□□ -1.09
ZNF540-208ENST00000589857 SSBP4Q9BWG4 385 aaPredicted RBP8.23□□□□□ -1.09
ZNF540-208ENST00000589857 ZFAND3Q9H8U3 227 aa8.23□□□□□ -1.09
ZNF540-208ENST00000589857 HSPB8Q9UJY1 196 aa8.23□□□□□ -1.09
ZNF540-208ENST00000589857 SONP18583 2426 aaKnown RBP8.22□□□□□ -1.09
ZNF540-208ENST00000589857 TNCP24821 2201 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 FAM181BA6NEQ2 426 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 B4DSR2 109 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 BUB3O43684 328 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 SH2D1AO60880 128 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 IGHV3-23P01764 117 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 IGF1P05019 195 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 MSMBP08118 114 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 FBLN7Q53RD9 439 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 SAMD13Q5VXD3 122 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 CLEC19AQ6UXS0 136 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 NIT1Q86X76 327 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 ASCL2Q99929 193 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 ZMAT5Q9UDW3 170 aaKnown RBP8.22□□□□□ -1.09
ZNF540-208ENST00000589857 ZNF580Q9UK33 172 aa8.22□□□□□ -1.09
ZNF540-208ENST00000589857 TRAV40A0A0B4J280 105 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 IGHV4-61A0A0C4DH41 118 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 A0A0G2JLM5 398 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 FABP5P3A8MUU1 101 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 M0R3E3 92 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 APOHP02749 345 aaPredicted RBP8.21□□□□□ -1.1
ZNF540-208ENST00000589857 LINC00614P0C842 121 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 C3orf79P0CE67 100 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 HIST1H1AQ02539 215 aaPredicted RBP8.21□□□□□ -1.1
ZNF540-208ENST00000589857 KRTAP24-1Q3LI83 254 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 LCN12Q6JVE5 192 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 C9orf139Q6ZV77 190 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 CCDC140Q96MF4 163 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 TMEM70Q9BUB7 260 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 UQCR10Q9UDW1 63 aa8.21□□□□□ -1.1
ZNF540-208ENST00000589857 IGKV2-40A0A087WW87 121 aaPredicted RBP8.2□□□□□ -1.1
ZNF540-208ENST00000589857 J3QLI3 93 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 NDUFA4O00483 81 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 IGKV2D-40P01614 121 aaPredicted RBP8.2□□□□□ -1.1
ZNF540-208ENST00000589857 TRGV3P03979 118 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 CTRLP40313 264 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 SSTP61278 116 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 C19orf54Q5BKX5 351 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 TMEM78Q5T7P6 136 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 ZNF705AQ6ZN79 300 aaPredicted RBP8.2□□□□□ -1.1
ZNF540-208ENST00000589857 FA2HQ7L5A8 372 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 FER1L6-AS1Q8NA97 138 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 PPP1R14DQ9NXH3 145 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 LAMTOR2Q9Y2Q5 125 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 PAM16Q9Y3D7 125 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 LENEPQ9Y5L5 61 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 SMAD5-AS1Q9Y6J3 95 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 U3KQE9 123 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 ZANQ9Y493 2812 aa8.2□□□□□ -1.1
ZNF540-208ENST00000589857 A6NDX4 124 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 HSBP1L1C9JCN9 74 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 G3V318 75 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 TCF21O43680 179 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 LEPROTL1O95214 131 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 IGHG2P01859 326 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 PPBPP02775 128 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 ARMS2P0C7Q2 107 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 ARL3P36405 182 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 SCGB2A2Q13296 93 aa8.19□□□□□ -1.1
ZNF540-208ENST00000589857 SPATA45Q537H7 98 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms