RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 URB1-AS1Q96HZ7 61 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 KRTAP17-1Q9BYP8 105 aa5.64□□□□□ -1.51
VPS13C-206ENST00000558338 ADGRG4Q8IZF6 3080 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 IGHV1-69DA0A0B4J2H0 117 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 HSBP1L1C9JCN9 74 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 H3BUA1 57 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 SYS1-DBNDD2H3BUS1 97 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 TCAPO15273 167 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 BUB3O43684 328 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 IGHV1-69P01742 117 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 IGHV4-39P01824 125 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 ATP5G2Q06055 141 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 LCN12Q6JVE5 192 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 Q6ZN92 141 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 BCL6BQ8N143 479 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-206ENST00000558338 FER1L6-AS1Q8NA97 138 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 OR10AG1Q8NH19 301 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 CCL19Q99731 98 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 ST20Q9HBF5 79 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 SMAD5-AS1Q9Y6J3 95 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 ARHGAP32A7KAX9 2087 aa5.63□□□□□ -1.51
VPS13C-206ENST00000558338 SMG1Q96Q15 3661 aaKnown RBP5.62□□□□□ -1.51
VPS13C-206ENST00000558338 TRAV41A0A0B4J266 112 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 OR4C46A6NHA9 309 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 FABP5P3A8MUU1 101 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 C19orf84I3L1E1 186 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 BRI3O95415 125 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 UQCRFS1P47985 274 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 COL5A1-AS1Q5SY13 56 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 FAM104BQ5XKR9 115 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 LYZL1Q6UWQ5 148 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 CLEC19AQ6UXS0 136 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 ORMDL3Q8N138 153 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 ASCL2Q99929 193 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 MEGF9Q9H1U4 602 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 MRPS16Q9Y3D3 137 aaKnown RBP5.62□□□□□ -1.51
VPS13C-206ENST00000558338 U3KQK5 164 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 SPTBN2O15020 2390 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 CEP295Q9C0D2 2601 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 IGLC6P0CF74 106 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 RNF224P0DH78 156 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 HIST1H1AQ02539 215 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-206ENST00000558338 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 PRSS3P2Q8NHM4 247 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 CNFNQ9BYD5 112 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 KRTAP4-9Q9BYQ8 210 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 KRTAP4-2Q9BYR5 136 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 LAMTOR2Q9Y2Q5 125 aa5.62□□□□□ -1.51
VPS13C-206ENST00000558338 ABCA4P78363 2273 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 ADARB2-AS1A8MUL3 147 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 M0QZ24 198 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 PPBPP02775 128 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 C19orf54Q5BKX5 351 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 C9orf139Q6ZV77 190 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 Q71RC1 249 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-206ENST00000558338 C10orf105Q8TEF2 133 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 PRELID3AQ96N28 172 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 VGLL1Q99990 258 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 MS4A6AQ9H2W1 248 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 U3KQE9 123 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 SPTA1P02549 2419 aa5.61□□□□□ -1.51
VPS13C-206ENST00000558338 TPRP12270 2363 aaKnown RBP5.6□□□□□ -1.51
VPS13C-206ENST00000558338 TMSB15BA0A087X1C1 80 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 TRAV40A0A0B4J280 105 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 CLPSL1A2RUU4 121 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 G3V318 75 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 H0Y8G0 127 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 IGHG4P01861 327 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 IGF1P05019 195 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 TSPOP30536 169 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 DSCR9P59020 149 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 TWIST1Q15672 202 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 TMEM78Q5T7P6 136 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 SPATA12Q7Z6I5 190 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 ATOH7Q8N100 152 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 Q8TAT8 98 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 USMG5Q96IX5 58 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 LENEPQ9Y5L5 61 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 KALRNO60229 2985 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 D6R8Y8 96 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 ORM1P02763 201 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 TRGV3P03979 118 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 CSN3P07498 182 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 IGLL1P15814 213 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 ZNF138P52744 262 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 GAGE1Q13065 139 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 BATFQ16520 125 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 LINC01545Q5VT33 79 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 C8orf86Q6ZUL3 223 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 NPFFR1Q9GZQ6 430 aa5.6□□□□□ -1.51
VPS13C-206ENST00000558338 IGHV3-35A0A0C4DH35 117 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 IGHV4-61A0A0C4DH41 118 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 TMEM213A2RRL7 107 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 NDUFA4O00483 81 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 GATA3P23771 443 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 HLA-DMBP28068 263 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 CKS2P33552 79 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 ZNF80P51504 273 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-206ENST00000558338 MRPL51Q4U2R6 128 aaKnown RBP5.59□□□□□ -1.51
VPS13C-206ENST00000558338 C9orf47Q6ZRZ4 202 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms