RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.98□□□□□ -0.813e-7■■■□□ 14.8
LDLR-207ENST00000558013 RHOGP84095 191 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 ZNF738Q8NE65 137 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 OR10AG1Q8NH19 301 aa9.98□□□□□ -0.81
LDLR-207ENST00000558013 CBY3A6NI87 242 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 GATA1P15976 413 aaPredicted RBP9.97□□□□□ -0.81
LDLR-207ENST00000558013 ANKRD39Q53RE8 183 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 PRSS57Q6UWY2 283 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 CLEC19AQ6UXS0 136 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 SIRPDQ9H106 197 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 THYN1Q9P016 225 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 SAA4P35542 130 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 PSG9Q00887 426 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 LY6DQ14210 128 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 CCDC144NLQ6NUI1 221 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 TMEM219Q86XT9 240 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 FER1L6-AS1Q8NA97 138 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 GATD1Q8NB37 220 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 RNASE8Q8TDE3 154 aaKnown RBP9.97□□□□□ -0.81
LDLR-207ENST00000558013 UBTD1Q9HAC8 227 aa9.97□□□□□ -0.81
LDLR-207ENST00000558013 ZANQ9Y493 2812 aa9.96□□□□□ -0.81
LDLR-207ENST00000558013 CKS2P33552 79 aa9.96□□□□□ -0.81
LDLR-207ENST00000558013 KLRB1Q12918 225 aa9.96□□□□□ -0.81
LDLR-207ENST00000558013 IL17RELQ6ZVW7 336 aa9.96□□□□□ -0.81
LDLR-207ENST00000558013 ORMDL3Q8N138 153 aa9.96□□□□□ -0.81
LDLR-207ENST00000558013 ABCA2Q9BZC7 2435 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 TAX1BP3O14907 124 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 EVI2AP22794 236 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 UBE2V1Q13404 147 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 ZNF48Q96MX3 618 aaPredicted RBP9.96□□□□□ -0.82
LDLR-207ENST00000558013 C18orf15Q96N68 181 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 CACNG7P62955 275 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 EBI3Q14213 229 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 CCDC140Q96MF4 163 aa9.96□□□□□ -0.82
LDLR-207ENST00000558013 CLPSL1A2RUU4 121 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 VAMP3Q15836 100 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 Q6AWC8 147 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 C2orf91Q6ZV80 131 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 ZNF502Q8TBZ5 544 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 BPESC1Q9GZL8 116 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 C11orf21Q9P2W6 132 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 CUBNO60494 3623 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 BUB3O43684 328 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 SAPCD1Q5SSQ6 148 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 PSMG3-AS1Q96PY0 264 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 ZFAND3Q9H8U3 227 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 U3KQK5 164 aa9.95□□□□□ -0.82
LDLR-207ENST00000558013 SPRY2O43597 315 aa9.94□□□□□ -0.82
LDLR-207ENST00000558013 CSPG4Q6UVK1 2322 aa9.94□□□□□ -0.82
LDLR-207ENST00000558013 A0A1B0GW15 77 aa9.94□□□□□ -0.82
LDLR-207ENST00000558013 IGLC6P0CF74 106 aa9.94□□□□□ -0.82
LDLR-207ENST00000558013 PAX8Q06710 450 aa9.94□□□□□ -0.82
LDLR-207ENST00000558013 PKD1L2Q7Z442 2459 aa9.94□□□□□ -0.82
LDLR-207ENST00000558013 NHLH1Q02575 133 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 RNF185Q96GF1 192 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 DEFB1P60022 68 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 C1orf122Q6ZSJ8 110 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 DTX2Q86UW9 622 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 DKK2Q9UBU2 259 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 UQCRFS1P47985 274 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 MINOS1Q5TGZ0 78 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 MINOS1-NBL1R4GNA1 71 aa9.93□□□□□ -0.82
LDLR-207ENST00000558013 J3KRW8 73 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 COX8AP10176 69 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 S100A7AQ86SG5 101 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 AGPAT4-IT1Q9H0P7 198 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 USP9YO00507 2555 aaPredicted RBP9.92□□□□□ -0.82
LDLR-207ENST00000558013 IGKV3D-20A0A0C4DH25 116 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 IGHV2-70DA0A0C4DH43 119 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 C19orf84I3L1E1 186 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 IGF1P05019 195 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 NAA38Q9BRA0 125 aaKnown RBP9.92□□□□□ -0.82
LDLR-207ENST00000558013 POLQO75417 2590 aa9.92□□□□□ -0.82
LDLR-207ENST00000558013 USP9XQ93008 2570 aaPredicted RBP9.92□□□□□ -0.82
LDLR-207ENST00000558013 TRGV3P03979 118 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 FGF6P10767 208 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 LMO4P61968 165 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 AMMECR1LQ6DCA0 310 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 COX8CQ7Z4L0 72 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 DEFB125Q8N687 156 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 FAM110DQ8TAY7 271 aaPredicted RBP9.91□□□□□ -0.82
LDLR-207ENST00000558013 TTTY13Q9BZ97 58 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 TRAV8-2A0A0B4J237 113 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 TRAV26-2A0A0B4J265 109 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 FABP5P3A8MUU1 101 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 BRD3OSQ6XYD6 125 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 PCP2Q8IVA1 136 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 MS4A6AQ9H2W1 248 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 HBDP02042 147 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 BMI1P35226 326 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 UBE2E1P51965 193 aa9.91□□□□□ -0.82
LDLR-207ENST00000558013 OR4C5Q8NGB2 326 aa9.9□□□□□ -0.82
LDLR-207ENST00000558013 IFI27L1Q96BM0 104 aa9.9□□□□□ -0.82
LDLR-207ENST00000558013 TRAV8-6A0A0B4J262 113 aa9.9□□□□□ -0.82
LDLR-207ENST00000558013 OOSP1A8MZH6 123 aa9.9□□□□□ -0.82
LDLR-207ENST00000558013 MYO18BQ8IUG5 2567 aa9.9□□□□□ -0.83
LDLR-207ENST00000558013 CENPVL3A0A0U1RRI6 287 aa9.89□□□□□ -0.83
LDLR-207ENST00000558013 TRBV12-3P01733 135 aa9.89□□□□□ -0.83
LDLR-207ENST00000558013 HIST1H1AQ02539 215 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms