RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 DEFB103AP81534 67 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 CATR1Q13166 79 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 TMEM91Q6ZNR0 172 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 MIR17HGQ75NE6 70 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 AAED1Q7RTV5 226 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 TEN1Q86WV5 123 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 Q8NDZ9 215 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 OR5D16Q8NGK9 328 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 TXNDC17Q9BRA2 123 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 TTTY12Q9BZ98 90 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 RPRMQ9NS64 109 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 COMMD3Q9UBI1 195 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 ECM29Q5VYK3 1845 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 MAST2Q6P0Q8 1798 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 N4BP2Q86UW6 1770 aaPredicted RBP2.28□□□□□ -2.04
LINC00643-204ENST00000555934 KDM6BO15054 1643 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 RNF17Q9BXT8 1623 aaKnown RBP2.28□□□□□ -2.04
LINC00643-204ENST00000555934 PLXNC1O60486 1568 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 MED1Q15648 1581 aaPredicted RBP2.28□□□□□ -2.04
LINC00643-204ENST00000555934 PRDM15P57071 1507 aaPredicted RBP2.28□□□□□ -2.04
LINC00643-204ENST00000555934 ABCC2Q92887 1545 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 CCDC141Q6ZP82 1450 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 RGS12O14924 1447 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 PNMA8CA0A1B0GUJ8 204 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 IGHV3-7P01780 117 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 CD2P06729 351 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 SNRPD3P62318 126 aaKnown RBP2.28□□□□□ -2.04
LINC00643-204ENST00000555934 AKR1C1Q04828 323 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 SS18Q15532 418 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 KISS1Q15726 138 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 TMEM155Q4W5P6 130 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 EIF5AL1Q6IS14 154 aaKnown RBP2.28□□□□□ -2.04
LINC00643-204ENST00000555934 ZNF705AQ6ZN79 300 aaPredicted RBP2.28□□□□□ -2.04
LINC00643-204ENST00000555934 C7orf65Q6ZTY9 151 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 CNEP1R1Q8N9A8 125 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 PLPP5Q8NEB5 264 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 OR4B1Q8NGF8 309 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 ZNF714Q96N38 554 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 FANCMQ8IYD8 2048 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 NCKAP5O14513 1909 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 PLXNA3P51805 1871 aa2.28□□□□□ -2.04
LINC00643-204ENST00000555934 BCORL1Q5H9F3 1711 aa2.28□□□□□ -2.05
LINC00643-204ENST00000555934 UNC13BO14795 1591 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 ABCA8O94911 1581 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 CDK13Q14004 1512 aaKnown RBP2.27□□□□□ -2.05
LINC00643-204ENST00000555934 SCAPERQ9BY12 1400 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 NSD3Q9BZ95 1437 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 ANKRD50Q9ULJ7 1429 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 A0A0J9YW62 118 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 RER1O15258 196 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 KLF7O75840 302 aaPredicted RBP2.27□□□□□ -2.05
LINC00643-204ENST00000555934 IGHV1-69P01742 117 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 HBDP02042 147 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 SPINK8P0C7L1 97 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 TRGC1P0CF51 173 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 CCL5P13501 91 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 MRPL54Q6P161 138 aaKnown RBP2.27□□□□□ -2.05
LINC00643-204ENST00000555934 ATOH7Q8N100 152 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 KCNRGQ8N5I3 272 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 TTC9CQ8N5M4 171 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 SIGLECL1Q8N7X8 197 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 FGF13Q92913 245 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 MCEEQ96PE7 176 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 SCGB3A1Q96QR1 104 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 GINS4Q9BRT9 223 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 KIAA1551Q9HCM1 1747 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 TRPM1Q7Z4N2 1603 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 SLIT2O94813 1529 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 DLC1Q96QB1 1528 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 MYH7BA7E2Y1 1941 aa2.27□□□□□ -2.05
LINC00643-204ENST00000555934 ANKRD26Q9UPS8 1709 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 TRAV12-2A0A075B6T6 113 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 MDFIC2A0A1B0GVS7 189 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 GRIFINA4D1Z8 144 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 H3BQF6 201 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 SOSTDC1Q6X4U4 206 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 FOXI2Q6ZQN5 318 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 CLDND2Q8NHS1 167 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 COPS9Q8WXC6 57 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 DIRC1Q969H9 104 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 NAA60Q9H7X0 242 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 DNAJC15Q9Y5T4 150 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 PREX2Q70Z35 1606 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 IQGAP3Q86VI3 1631 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 NRKQ7Z2Y5 1582 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 ADGRB3O60242 1522 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 DUOX2Q9NRD8 1548 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 SIPA1L1O43166 1804 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 COL11A1P12107 1806 aaPredicted RBP2.26□□□□□ -2.05
LINC00643-204ENST00000555934 PHIPQ8WWQ0 1821 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 WNK3Q9BYP7 1800 aa2.26□□□□□ -2.05
LINC00643-204ENST00000555934 CDC42BPAQ5VT25 1732 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 QRICH2Q9H0J4 1663 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 GBF1Q92538 1859 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 VWDEQ8N2E2 1590 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 TRBV20-1A0A075B6N2 111 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-204ENST00000555934 J3QKU1 62 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 GEMIN2O14893 280 aaKnown RBP2.25□□□□□ -2.05
LINC00643-204ENST00000555934 NPYP01303 97 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms