RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 GATD1Q8NB37 220 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 PHLDA1Q8WV24 401 aaPredicted RBP11.14□□□□□ -0.63
USP48-213ENST00000529637 TMEM189A5PLL7 270 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 IGLV1-47P01700 117 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 KLF17Q5JT82 389 aaPredicted RBP11.14□□□□□ -0.63
USP48-213ENST00000529637 FAM104BQ5XKR9 115 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 PSG8Q9UQ74 426 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 INSL3P51460 131 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 CCDC144NLQ6NUI1 221 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 AMTNQ6UX39 209 aa11.14□□□□□ -0.63
USP48-213ENST00000529637 ZNF672Q499Z4 452 aaPredicted RBP11.13□□□□□ -0.63
USP48-213ENST00000529637 ZNF493Q6ZR52 646 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 ORMDL3Q8N138 153 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 ARPC1AQ92747 370 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 SPANXB1Q9NS25 103 aaPredicted RBP11.13□□□□□ -0.63
USP48-213ENST00000529637 CHD8Q9HCK8 2581 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 CCL21O00585 134 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 ETDBQ3ZM63 59 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 HHLA3Q9XRX5 114 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 BSNQ9UPA5 3926 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 H3BMG7 143 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 KLRD1Q13241 179 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 CD300EQ496F6 205 aaPredicted RBP11.13□□□□□ -0.63
USP48-213ENST00000529637 VKORC1Q9BQB6 163 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 CHAC1Q9BUX1 264 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 SMPXQ9UHP9 88 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 U3KQK5 164 aa11.13□□□□□ -0.63
USP48-213ENST00000529637 DCHS2Q6V1P9 2916 aa11.12□□□□□ -0.63
USP48-213ENST00000529637 SVEP1Q4LDE5 3571 aa11.12□□□□□ -0.63
USP48-213ENST00000529637 TEX22C9J3V5 150 aa11.12□□□□□ -0.63
USP48-213ENST00000529637 PRSS47A8MTI9 375 aa11.12□□□□□ -0.63
USP48-213ENST00000529637 ATP5G2Q06055 141 aa11.12□□□□□ -0.63
USP48-213ENST00000529637 GTSCR1Q86UQ5 136 aa11.12□□□□□ -0.63
USP48-213ENST00000529637 SPAG8Q99932 426 aaPredicted RBP11.12□□□□□ -0.63
USP48-213ENST00000529637 ZNF562Q6V9R5 426 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 ATP6V0BQ99437 205 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 CKS2P33552 79 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 CEACAM3P40198 252 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 SIGLEC15Q6ZMC9 328 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 MSRB1Q9NZV6 116 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 TRBV19A0A075B6N1 114 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 TRBV25-1A0A075B6N4 114 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 IL4P05112 153 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 BMI1P35226 326 aa11.11□□□□□ -0.63
USP48-213ENST00000529637 NCBP2LA6PVI3 153 aaKnown RBP11.1□□□□□ -0.63
USP48-213ENST00000529637 RAB9AP51151 201 aa11.1□□□□□ -0.63
USP48-213ENST00000529637 CRYGBP07316 175 aa11.1□□□□□ -0.63
USP48-213ENST00000529637 SVIPQ8NHG7 77 aa11.1□□□□□ -0.63
USP48-213ENST00000529637 TMEM75Q8N9X5 138 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 TIMD4Q96H15 378 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 K7ENP7 123 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 ODF1Q14990 250 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 ASH1LQ9NR48 2969 aaKnown RBP11.09□□□□□ -0.63
USP48-213ENST00000529637 A0A1B0GW15 77 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 IGKV1-17P01599 117 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 IGHV3-23P01764 117 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 LCNL1Q6ZST4 164 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 DPM3Q9P2X0 92 aa11.09□□□□□ -0.63
USP48-213ENST00000529637 IGLL5B9A064 214 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 TWIST1Q15672 202 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 MAPKAPK5-AS1Q8N8E1 139 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 TMEM14CQ9P0S9 112 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 A0A1B0GV72 72 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 E9PLD3 99 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 I3L2K1 104 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 SH2D1AO60880 128 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 SCGB1A1P11684 91 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 GATA1P15976 413 aaPredicted RBP11.08□□□□□ -0.64
USP48-213ENST00000529637 EVI2AP22794 236 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 LEPP41159 167 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 RAB1BQ9H0U4 201 aa11.08□□□□□ -0.64
USP48-213ENST00000529637 NBR2O15453 112 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 PRSS1P07477 247 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 PPIFP30405 207 aaKnown RBP11.07□□□□□ -0.64
USP48-213ENST00000529637 NBL1P41271 181 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 PVRIGQ6DKI7 326 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 FOXI2Q6ZQN5 318 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 CEND1Q8N111 149 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 IGHV3OR16-8A0A075B7F1 116 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 IGHV3-35A0A0C4DH35 117 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 ZC2HC1BQ5TFG8 222 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 CKS1BP61024 79 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 RNF125Q96EQ8 232 aa11.07□□□□□ -0.64
USP48-213ENST00000529637 TRAV26-1A0A087WT03 109 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 K7EQM0 130 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 NDUFS8O00217 210 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 CT45A10P0DMU9 189 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 EGR2P11161 476 aaPredicted RBP11.06□□□□□ -0.64
USP48-213ENST00000529637 ZNF575Q86XF7 245 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 ZNF479Q96JC4 524 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 SPATA25Q9BR10 227 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 TRBV6-1A0A0K0K1D8 114 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 K7EIM0 57 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 Q6AWC8 147 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 Q8TAT8 98 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 ZMAT4Q9H898 229 aa11.06□□□□□ -0.64
USP48-213ENST00000529637 IGKV2-40A0A087WW87 121 aaPredicted RBP11.05□□□□□ -0.64
USP48-213ENST00000529637 F8W1H4 67 aa11.05□□□□□ -0.64
USP48-213ENST00000529637 IGKV2D-40P01614 121 aaPredicted RBP11.05□□□□□ -0.64
USP48-213ENST00000529637 ZNF80P51504 273 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms