RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SMAD5-AS1Q9Y6J3 95 aa7.21□□□□□ -1.26
LIMCH1-215ENST00000512632 CTSGP08311 255 aa7.21□□□□□ -1.26
LIMCH1-215ENST00000512632 LY6G5BQ8NDX9 201 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 A1L4Q6 167 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 NDUFS7O75251 213 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 NDUFA3O95167 84 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 CDSNQ15517 529 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 S100A7AQ86SG5 101 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 RNF182Q8N6D2 247 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 LGALS9BQ3B8N2 356 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 LGALS9CQ6DKI2 356 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 NPBQ8NG41 125 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 OR11H6Q8NGC7 330 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 IGHG4P01861 327 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 TMEM11P17152 192 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 VKORC1Q9BQB6 163 aa7.2□□□□□ -1.26
LIMCH1-215ENST00000512632 PRSS1P07477 247 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 BMI1P35226 326 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 U3KQK5 164 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 SMAD7O15105 426 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 ZNF207O43670 478 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 ECSCRQ19T08 205 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 BOD1L2Q8IYS8 172 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 TIMD4Q96H15 378 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 SAP30O75446 220 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 PRTN3P24158 256 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 SEC11AP67812 179 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 FOXC1Q12948 553 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 S100A7P31151 101 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 LEPP41159 167 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 TCF15Q12870 199 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 KIR3DS1Q14943 382 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 VMO1Q7Z5L0 202 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 ZNF575Q86XF7 245 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 JMJD8Q96S16 334 aa7.19□□□□□ -1.26
LIMCH1-215ENST00000512632 CCL21O00585 134 aa7.18□□□□□ -1.26
LIMCH1-215ENST00000512632 FABP5P3A8MUU1 101 aa7.18□□□□□ -1.26
LIMCH1-215ENST00000512632 CLEC3BP05452 202 aa7.18□□□□□ -1.26
LIMCH1-215ENST00000512632 MAP1LC3AQ9H492 121 aa7.18□□□□□ -1.26
LIMCH1-215ENST00000512632 IGLC6P0CF74 106 aa7.18□□□□□ -1.26
LIMCH1-215ENST00000512632 TTC9CQ8N5M4 171 aa7.18□□□□□ -1.26
LIMCH1-215ENST00000512632 RNF185Q96GF1 192 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 IGKV2D-26A0A0A0MRZ7 120 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 A6NDN8 102 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 C15orf32Q32M92 178 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 IL17RELQ6ZVW7 336 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 IGHV7-81A0A0B4J1V7 117 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 PAX8Q06710 450 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 A0A0G2JLM5 398 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 TNFRSF6BO95407 300 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 GCSHP23434 173 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 RPS20P60866 119 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 Q6ZQT7 251 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 OR1N2Q8NGR9 330 aa7.17□□□□□ -1.26
LIMCH1-215ENST00000512632 C9orf118A6NHY6 69 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 K7EMI3 77 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 COTL1Q14019 142 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 ODF3BA8MYP8 253 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 HSD52Q0P140 79 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 MEGF9Q9H1U4 602 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 LINC01548A6NM66 108 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 G3V318 75 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 H3BRM9 83 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 J3KRW8 73 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 K7ERU9 68 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 SPRY2O43597 315 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 ZFP36P26651 326 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 CLEC19AQ6UXS0 136 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 ADAMTSL5Q6ZMM2 481 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 GTSCR1Q86UQ5 136 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 OR2K2Q8NGT1 345 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 FOXC2Q99958 501 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 SPG11Q96JI7 2443 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 TRAV26-2A0A0B4J265 109 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 CCDC144NLQ6NUI1 221 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 TMEM158Q8WZ71 300 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 C11orf21Q9P2W6 132 aa7.16□□□□□ -1.26
LIMCH1-215ENST00000512632 GTF2H5Q6ZYL4 71 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 DTX2Q86UW9 622 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 OR9G4Q8NGQ1 327 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 DPF1Q92782 380 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 AGPAT4-IT1Q9H0P7 198 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 UFC1Q9Y3C8 167 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 M0R1W7 72 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 TRGV3P03979 118 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 RIPPLY3P57055 190 aa7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 COL25A1Q9BXS0 654 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-215ENST00000512632 IGKV3D-20A0A0C4DH25 116 aa7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 Q8N9W7 124 aa7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 ZNF48Q96MX3 618 aaPredicted RBP7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 TMEM160Q9NX00 188 aa7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 FBLL1A6NHQ2 334 aaKnown RBP7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 BUB3O43684 328 aa7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 PPBPP02775 128 aa7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 LINC00527Q9UJ94 153 aa7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 MSRB2Q9Y3D2 182 aa7.15□□□□□ -1.27
LIMCH1-215ENST00000512632 SCGB2A1O75556 95 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 ODF1Q14990 250 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 ZC2HC1BQ5TFG8 222 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 ATP6V0E1O15342 81 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms