RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 Q96M85 177 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 TNFRSF19Q9NS68 423 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 ARID1BQ8NFD5 2236 aaPredicted RBP3.02□□□□□ -1.93
NEDD4-209ENST00000508871 CCDC88CQ9P219 2028 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 IGHV1OR15-1A0A075B7D0 117 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 J3QQQ9 107 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 RPS11P62280 158 aaKnown RBP eCLIP3.02□□□□□ -1.93
NEDD4-209ENST00000508871 PRIMA1Q86XR5 153 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 NDUFAF8A1L188 74 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 ZNF503-AS2A6NEH8 195 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 TSHBP01222 138 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 BRS3P32247 399 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 HIGD2BQ4VC39 106 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 C16orf74Q96GX8 76 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 SHANK2-AS3Q9BTD1 123 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 TTTY13Q9BZ97 58 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 CCL28Q9NRJ3 127 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 MCRIP1C9JLW8 97 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 H3BQ15 152 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 HBDP02042 147 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 CCL3P10147 92 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 ZNF32P17041 273 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 BLCAPP62952 87 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 KTN1-AS1Q86SY8 53 aa3.02□□□□□ -1.93
NEDD4-209ENST00000508871 MRPL32Q9BYC8 188 aaKnown RBP3.02□□□□□ -1.93
NEDD4-209ENST00000508871 NHP2Q9NX24 153 aaKnown RBP3.02□□□□□ -1.93
NEDD4-209ENST00000508871 DNASE2O00115 360 aaPredicted RBP3.01□□□□□ -1.93
NEDD4-209ENST00000508871 TM4SF5O14894 197 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 PSMB8P28062 276 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 OR8B3Q8NGG8 313 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 SRCAPQ6ZRS2 3230 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 IGHV3-72A0A0B4J1Y9 119 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 UBE2L5PA0A1B0GUS4 154 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 DIAPH2-AS1Q14236 149 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 NFE4Q86UQ8 179 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 NXT2Q9NPJ8 142 aaKnown RBP3.01□□□□□ -1.93
NEDD4-209ENST00000508871 ARID1AO14497 2285 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 TRBV27A0A0K0K1C4 114 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 C7orf66A4D0T2 115 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 IGFL3Q6UXB1 125 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 BAGE3Q86Y29 109 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 BAGE2Q86Y30 109 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 Q8NBF4 154 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 DYNLRB2Q8TF09 96 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 ZNF524Q96C55 264 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 IGHV3OR16-10A0A075B7F0 116 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 PYDC2Q56P42 97 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 Q6ZRU5 148 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 RPRMLQ8N4K4 120 aa3.01□□□□□ -1.93
NEDD4-209ENST00000508871 TMEM235A6NFC5 223 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 C8orf87E5RJ46 101 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 PSG2P11465 335 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 HLA-DRB4P13762 266 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 WT1P19544 449 aaPredicted RBP3□□□□□ -1.93
NEDD4-209ENST00000508871 GATA2P23769 480 aaPredicted RBP3□□□□□ -1.93
NEDD4-209ENST00000508871 ZNF79Q15937 498 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 C6orf223Q8N319 242 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 PPDPFLQ8WWR9 84 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 TTTY12Q9BZ98 90 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 RPRMQ9NS64 109 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 HLA-DRB4X5D2U9 266 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 IGHV3-73A0A0B4J1V6 119 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 FAM27BQ5VT28 67 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 FAM19A1Q7Z5A9 133 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 H1FOOQ8IZA3 346 aaPredicted RBP3□□□□□ -1.93
NEDD4-209ENST00000508871 EXOC3-AS1Q8N2X6 119 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 WBP1Q96G27 269 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 RETNLBQ9BQ08 111 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 NCKAP5O14513 1909 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 TRAV12-2A0A075B6T6 113 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 A0A1W2PNU3 283 aaPredicted RBP3□□□□□ -1.93
NEDD4-209ENST00000508871 CRPP02741 224 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 ZNF816Q0VGE8 651 aaPredicted RBP3□□□□□ -1.93
NEDD4-209ENST00000508871 ZNF525Q8N782 197 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 ZNF491Q8N8L2 437 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 ITLN1Q8WWA0 313 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 PYGO2Q9BRQ0 406 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 C9orf170A2RU37 121 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 M0R2P5 195 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 PRSS54Q6PEW0 395 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 TTC9CQ8N5M4 171 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 URB1-AS1Q96HZ7 61 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 CTSZQ9UBR2 303 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 TNRC6AQ8NDV7 1962 aaKnown RBP3□□□□□ -1.93
NEDD4-209ENST00000508871 IGHV3-7P01780 117 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 GYPBP06028 91 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 SEC11AP67812 179 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 OR5AS1Q8N127 324 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 LYG1Q8N1E2 194 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 SRSF12Q8WXF0 261 aaKnown RBP3□□□□□ -1.93
NEDD4-209ENST00000508871 GNB4Q9HAV0 340 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 OR5V1Q9UGF6 321 aa3□□□□□ -1.93
NEDD4-209ENST00000508871 NUP214P35658 2090 aaPredicted RBP2.99□□□□□ -1.93
NEDD4-209ENST00000508871 CD5LO43866 347 aa2.99□□□□□ -1.93
NEDD4-209ENST00000508871 NPYP01303 97 aa2.99□□□□□ -1.93
NEDD4-209ENST00000508871 FRMD6-AS1P0C7T7 363 aa2.99□□□□□ -1.93
NEDD4-209ENST00000508871 NANOS3P60323 173 aaKnown RBP2.99□□□□□ -1.93
NEDD4-209ENST00000508871 MPV17LQ2QL34 196 aa2.99□□□□□ -1.93
NEDD4-209ENST00000508871 SMIM4Q8WVI0 70 aa2.99□□□□□ -1.93
NEDD4-209ENST00000508871 SNHG12Q9BXW3 62 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms