RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TCOF1Q13428 1488 aaKnown RBP0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 MED12Q93074 2177 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 CHD3Q12873 2000 aaKnown RBP0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 MYO5AQ9Y4I1 1855 aaKnown RBP0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 TRBV27A0A0K0K1C4 114 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 SAA1P0DJI8 122 aaPredicted RBP0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 PDE6GP18545 87 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 HRCT1Q6UXD1 115 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 THEM6Q8WUY1 208 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 RMND5BQ96G75 393 aaPredicted RBP0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 AP1S3Q96PC3 154 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 LXNQ9BS40 222 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 C10orf95Q9H7T3 257 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 NIT2Q9NQR4 276 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 MED31Q9Y3C7 131 aa0.67□□□□□ -2.3
HMGB1P28-201ENST00000507778 MYLKQ15746 1914 aa0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 N4BP2Q86UW6 1770 aaPredicted RBP0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 DLC1Q96QB1 1528 aa0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 TRAV13-1A0A0B4J241 112 aa0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 TEX29Q8N6K0 151 aa0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 CIB3Q96Q77 187 aaPredicted RBP0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 SIP14410 1827 aa0.66□□□□□ -2.3
HMGB1P28-201ENST00000507778 TRBV7-6A0A0J9YX20 115 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 LOC107986453A0A1B0GWG9 222 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 IFNA21P01568 189 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 SPINT3P49223 89 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 SRP9P49458 86 aaKnown RBP0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 POLR2HP52434 150 aaKnown RBP0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 TFAMQ00059 246 aaKnown RBP0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 Q86TA4 180 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 ATOH7Q8N100 152 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 C10orf111Q8N326 155 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 C5orf17Q8NAS9 161 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 MORN4Q8NDC4 146 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 CCL19Q99731 98 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 LPAR5Q9H1C0 372 aa0.65□□□□□ -2.31
HMGB1P28-201ENST00000507778 A0A0D9SG42 100 aa0.64□□□□□ -2.31
HMGB1P28-201ENST00000507778 SULT1C4O75897 302 aa0.64□□□□□ -2.31
HMGB1P28-201ENST00000507778 IGHV3-30P01768 117 aa0.64□□□□□ -2.31
HMGB1P28-201ENST00000507778 IGHV3-30-5P0DP03 117 aa0.64□□□□□ -2.31
HMGB1P28-201ENST00000507778 FKBP11Q9NYL4 201 aa0.64□□□□□ -2.31
HMGB1P28-201ENST00000507778 TRAPPC2LQ9UL33 140 aa0.64□□□□□ -2.31
HMGB1P28-201ENST00000507778 ARL5CA6NH57 179 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 BBIP1A8MTZ0 92 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 H3BMG7 143 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 PGRMC1O00264 195 aaKnown RBP0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 FREM3P0C091 2139 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 CCL4P13236 92 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 RPL7P18124 248 aaKnown RBP0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 SAMD13Q5VXD3 122 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 TOMM20LQ6UXN7 152 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 IZUMO2Q6UXV1 221 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 NABP2Q9BQ15 211 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 SELENOSQ9BQE4 189 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 PTPRFP10586 1907 aa0.63□□□□□ -2.31
HMGB1P28-201ENST00000507778 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 LOC107984156A0A0G2JMH3 177 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 LOC107984640A0A0U1RRK4 108 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 A6NN06 94 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 CRYGSP22914 178 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 FXYD6P3P58550 94 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 Q6ZS92 163 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 SMIM15Q7Z3B0 74 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 ARL17AQ8IVW1 177 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 TCTEX1D1Q8N7M0 179 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 OR51A4Q8NGJ6 313 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 OR9Q1Q8NGQ5 310 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 MPC1Q9Y5U8 109 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 ZFC3H1O60293 1989 aaKnown RBP0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 TET1Q8NFU7 2136 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 FAM135BQ49AJ0 1406 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 FGD6Q6ZV73 1430 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 MYH2Q9UKX2 1941 aa0.62□□□□□ -2.31
HMGB1P28-201ENST00000507778 GYPBP06028 91 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 ZNF137PP52743 207 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 DNAJB13P59910 316 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 LSM3P62310 102 aaKnown RBP0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 CCSMST1Q4G0I0 132 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 TMEM128Q5BJH2 165 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 C3orf62Q6ZUJ4 267 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 TMEM229BQ8NBD8 167 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 DDA1Q9BW61 102 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 CBLN4Q9NTU7 201 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 A2MP01023 1474 aa0.61□□□□□ -2.31
HMGB1P28-201ENST00000507778 CITO14578 2027 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 A0A1W2PPB8 328 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 A0A1W2PRS3 328 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 KIR3DP1A8MWS1 328 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 RPS3P23396 243 aaKnown RBP eCLIP0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 S100GP29377 79 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 CAV3P56539 151 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 SNRPD3P62318 126 aaKnown RBP0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 C6orf52Q5T4I8 152 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 CSAG1Q6PB30 78 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 CCDC115Q96NT0 180 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 FANCMQ8IYD8 2048 aa0.6□□□□□ -2.31
HMGB1P28-201ENST00000507778 PBRM1Q86U86 1689 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 IFITM5A6NNB3 132 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 M0QZK8 103 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms