RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 TAF9BQ9HBM6 251 aa0.9□□□□□ -2.27
SMC4-225ENST00000497203 BOKQ9UMX3 212 aaPredicted RBP0.9□□□□□ -2.27
SMC4-225ENST00000497203 MED31Q9Y3C7 131 aa0.9□□□□□ -2.27
SMC4-225ENST00000497203 TANC2Q9HCD6 1990 aa0.89□□□□□ -2.27
SMC4-225ENST00000497203 TRBV27A0A0K0K1C4 114 aa0.89□□□□□ -2.27
SMC4-225ENST00000497203 SAA1P0DJI8 122 aaPredicted RBP0.89□□□□□ -2.27
SMC4-225ENST00000497203 MAXP61244 160 aa0.89□□□□□ -2.27
SMC4-225ENST00000497203 SAMD13Q5VXD3 122 aa0.89□□□□□ -2.27
SMC4-225ENST00000497203 CASC2Q6XLA1 102 aa0.89□□□□□ -2.27
SMC4-225ENST00000497203 SBSPONQ8IVN8 264 aa0.89□□□□□ -2.27
SMC4-225ENST00000497203 TRAV13-1A0A0B4J241 112 aa0.88□□□□□ -2.27
SMC4-225ENST00000497203 TRBV7-6A0A0J9YX20 115 aa0.88□□□□□ -2.27
SMC4-225ENST00000497203 A0A0J9YY99 117 aa0.88□□□□□ -2.27
SMC4-225ENST00000497203 POLR2HP52434 150 aaKnown RBP0.88□□□□□ -2.27
SMC4-225ENST00000497203 TMEM128Q5BJH2 165 aa0.88□□□□□ -2.27
SMC4-225ENST00000497203 GLIPR1L1Q6UWM5 242 aa0.88□□□□□ -2.27
SMC4-225ENST00000497203 BCL9O00512 1426 aa0.88□□□□□ -2.27
SMC4-225ENST00000497203 TCOF1Q13428 1488 aaKnown RBP0.87□□□□□ -2.27
SMC4-225ENST00000497203 C3orf85A0A1B0GTC6 90 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 H3BMG7 143 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 CD14P08571 375 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 SPTBP11277 2137 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 S100GP29377 79 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 LSM3P62310 102 aaKnown RBP0.87□□□□□ -2.27
SMC4-225ENST00000497203 HRCT1Q6UXD1 115 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 ZCCHC23Q6ZST2 131 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 SKA2Q8WVK7 121 aaPredicted RBP0.87□□□□□ -2.27
SMC4-225ENST00000497203 CLEC2BQ92478 149 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 AP1S3Q96PC3 154 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 CIB3Q96Q77 187 aaPredicted RBP0.87□□□□□ -2.27
SMC4-225ENST00000497203 DLC1Q96QB1 1528 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 FBN2P35556 2912 aa0.87□□□□□ -2.27
SMC4-225ENST00000497203 MUC4Q99102 2169 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 NOTCH1P46531 2555 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.86□□□□□ -2.27
SMC4-225ENST00000497203 LOC107986453A0A1B0GWG9 222 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 TSTD3H0UI37 97 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 NEDD8Q15843 81 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 OCIAD2Q56VL3 154 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 KRTAP5-10Q6L8G5 202 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 TEX29Q8N6K0 151 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 MORN4Q8NDC4 146 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 TRAPPC2LQ9UL33 140 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 A2MP01023 1474 aa0.86□□□□□ -2.27
SMC4-225ENST00000497203 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 SULT1C4O75897 302 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 PDE6GP18545 87 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 FXYD4P59646 89 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 CCSMST1Q4G0I0 132 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 C5orf17Q8NAS9 161 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 TMEM35BQ8NCS4 154 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 CCDC115Q96NT0 180 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 NINQ8N4C6 2090 aa0.85□□□□□ -2.27
SMC4-225ENST00000497203 FER1L6Q2WGJ9 1857 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 LOC107984640A0A0U1RRK4 108 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 PRORSD1PA6NEY8 169 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 ARL5CA6NH57 179 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 BBIP1A8MTZ0 92 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 ZNF727A8MUV8 499 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 RPL7P18124 248 aaKnown RBP0.84□□□□□ -2.27
SMC4-225ENST00000497203 CRYGSP22914 178 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 DNAJB13P59910 316 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 IZUMO2Q6UXV1 221 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 C10orf111Q8N326 155 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 TMEM229BQ8NBD8 167 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 NIT2Q9NQR4 276 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 HSPB11Q9Y547 144 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 MPC1Q9Y5U8 109 aa0.84□□□□□ -2.27
SMC4-225ENST00000497203 KIAA1549LQ6ZVL6 1849 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 TRBV30A0A0K0K1B3 111 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 GNG14A0A1W2PPG7 69 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 A6NN06 94 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 H0YJX3 145 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 IGHV3-30P01768 117 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 IGHV3-30-5P0DP03 117 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 FOXA3P55318 350 aaPredicted RBP0.83□□□□□ -2.28
SMC4-225ENST00000497203 B2MP61769 119 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 Q6ZQY7 126 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 TCTEX1D1Q8N7M0 179 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 NABP2Q9BQ15 211 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 LIMD2Q9BT23 127 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 CBLN4Q9NTU7 201 aa0.83□□□□□ -2.28
SMC4-225ENST00000497203 USP54Q70EL1 1684 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 RPS3P23396 243 aaKnown RBP eCLIP0.82□□□□□ -2.28
SMC4-225ENST00000497203 RPL22P35268 128 aaKnown RBP0.82□□□□□ -2.28
SMC4-225ENST00000497203 ETV6P41212 452 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 RPL37AP61513 92 aaKnown RBP0.82□□□□□ -2.28
SMC4-225ENST00000497203 ATOH7Q8N100 152 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 OR5A2Q8NGI9 324 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 OR51A4Q8NGJ6 313 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 NAT14Q8WUY8 206 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 LPAR5Q9H1C0 372 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 C19orf12Q9NSK7 152 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 FKBP11Q9NYL4 201 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 NDUFAF1Q9Y375 327 aa0.82□□□□□ -2.28
SMC4-225ENST00000497203 FAM135BQ49AJ0 1406 aa0.81□□□□□ -2.28
SMC4-225ENST00000497203 IFITM5A6NNB3 132 aa0.81□□□□□ -2.28
SMC4-225ENST00000497203 RPS28P62857 69 aaKnown RBP0.81□□□□□ -2.28
SMC4-225ENST00000497203 SPINK9Q5DT21 86 aa0.81□□□□□ -2.28
SMC4-225ENST00000497203 C3orf62Q6ZUJ4 267 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms