RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 DCHS2Q6V1P9 2916 aa9.15□□□□□ -0.94
CPSF3-202ENST00000460593 F8W1H4 67 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 H3BRN7 92 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 SPRY2O43597 315 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 CNIH1O95406 144 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 TGFAP01135 160 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 ERCC8Q13216 396 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 SCGB2A2Q13296 93 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 PPP1R27Q86WC6 154 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 DEFB104AQ8WTQ1 72 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 RNF125Q96EQ8 232 aa9.15□□□□□ -0.95
CPSF3-202ENST00000460593 NDUFS8O00217 210 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 FHL3Q13643 280 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 Q6AWC8 147 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 SVIPQ8NHG7 77 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 GEMIN7Q9H840 131 aaKnown RBP9.14□□□□□ -0.95
CPSF3-202ENST00000460593 TRGV3P03979 118 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 TEX36Q5VZQ5 186 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 SYT8Q8NBV8 401 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 TM2D2Q9BX73 214 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 ASH1LQ9NR48 2969 aaKnown RBP9.14□□□□□ -0.95
CPSF3-202ENST00000460593 K7EIM0 57 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 MRPS12O15235 138 aaKnown RBP9.14□□□□□ -0.95
CPSF3-202ENST00000460593 DPM2O94777 84 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 MT-ATP8P03928 68 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 SCGB1A1P11684 91 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 Q6ZQT7 251 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 PRO0461Q9UI25 63 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 CYSLTR1Q9Y271 337 aa9.14□□□□□ -0.95
CPSF3-202ENST00000460593 J3QR89 54 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 NDUFB3O43676 98 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 LOXP28300 417 aaPredicted RBP9.13□□□□□ -0.95
CPSF3-202ENST00000460593 AAMDCQ9H7C9 122 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 ZMAT4Q9H898 229 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 HIGD1BQ9P298 99 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 APC2O95996 2303 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 APOMO95445 188 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 IGHV1-8P0DP01 117 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 ZNF418Q8TF45 676 aaPredicted RBP9.13□□□□□ -0.95
CPSF3-202ENST00000460593 PRR25Q96S07 402 aa9.13□□□□□ -0.95
CPSF3-202ENST00000460593 CD40P25942 277 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 PVRIGQ6DKI7 326 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 NFE4Q86UQ8 179 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 ABCA4P78363 2273 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 LYNX1G3V0Z9 82 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 CRYGBP07316 175 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 LYNX1P0DP58 116 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 MC5RP33032 325 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 RRN3P1Q2M238 152 aa9.12□□□□□ -0.95
CPSF3-202ENST00000460593 TRBV6-1A0A0K0K1D8 114 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 SMCPP49901 116 aaPredicted RBP9.11□□□□□ -0.95
CPSF3-202ENST00000460593 TTC9CQ8N5M4 171 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 SPTBN2O15020 2390 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 IGHV3OR16-13A0A075B7E8 117 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 IGHV3-74A0A0B4J1X5 117 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 IGHV1-3A0A0C4DH29 117 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 PRAC2D3DTV9 90 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 DTX2Q86UW9 622 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 SRSF8Q9BRL6 282 aaKnown RBP9.11□□□□□ -0.95
CPSF3-202ENST00000460593 PGPEP1Q9NXJ5 209 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 UFC1Q9Y3C8 167 aa9.11□□□□□ -0.95
CPSF3-202ENST00000460593 IGHV3-66A0A0C4DH42 116 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 K7EM74 188 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 SPINK8P0C7L1 97 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 ZFP2Q6ZN57 461 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 RNF182Q8N6D2 247 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 CDIP1Q9H305 208 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 FAM215AQ9Y5M1 114 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 LOC107984156A0A0G2JMH3 177 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 IGLC6P0CF74 106 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 DLX6P56179 175 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 MORN3Q6PF18 240 aaPredicted RBP9.1□□□□□ -0.95
CPSF3-202ENST00000460593 GFRALQ6UXV0 394 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 ARL17AQ8IVW1 177 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 C17orf100A8MU93 164 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 TMEM178BH3BS89 294 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 TMEM30BQ3MIR4 351 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 MRAP2Q96G30 205 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 SH3BGRL2Q9UJC5 107 aa9.1□□□□□ -0.95
CPSF3-202ENST00000460593 PSMB2P49721 201 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 XGP55808 180 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 ADIPOQQ15848 244 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 C8orf86Q6ZUL3 223 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 HLA-DRB4P13762 266 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 C1orf210Q8IVY1 113 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 CFHR4Q92496 578 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 HLA-DRB4X5D2U9 266 aa9.09□□□□□ -0.95
CPSF3-202ENST00000460593 FOXI1Q12951 378 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 TMEM155Q4W5P6 130 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 DYNAPQ8N1N2 210 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 LINC00311Q8N616 119 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 RPEQ96AT9 228 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 RNF183Q96D59 192 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 MRPL16Q9NX20 251 aaKnown RBP9.08□□□□□ -0.96
CPSF3-202ENST00000460593 IGHG4P01861 327 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 CD59P13987 128 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 IL17RELQ6ZVW7 336 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 C11orf21Q9P2W6 132 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 SS18L2Q9UHA2 77 aa9.08□□□□□ -0.96
CPSF3-202ENST00000460593 TRBV7-3A0A075B6L6 115 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms