RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CCL25O15444 150 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 SSBP2P81877 361 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-205ENST00000392004 TCTEX1D4Q5JR98 221 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 RNASE8Q8TDE3 154 aaKnown RBP8.08□□□□□ -1.12
COL6A3-205ENST00000392004 SLC25A39Q9BZJ4 359 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-205ENST00000392004 LY96Q9Y6Y9 160 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 TNFRSF13BO14836 293 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-205ENST00000392004 LINC00310P59036 64 aa8.08□□□□□ -1.12
COL6A3-205ENST00000392004 CCL24O00175 119 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 TRBV12-3P01733 135 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.07□□□□□ -1.12
COL6A3-205ENST00000392004 GGTLC1Q9BX51 225 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 FNDC4Q9H6D8 234 aaPredicted RBP8.07□□□□□ -1.12
COL6A3-205ENST00000392004 HIVEP1P15822 2718 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 APCP25054 2843 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 K7ERU9 68 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 M0R2Z0 102 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 HLA-DRB1P01911 266 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 TSPOP30536 169 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 ODF1Q14990 250 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 COX11Q9Y6N1 276 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 K7EN84 100 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 HOXD3P31249 432 aaPredicted RBP8.07□□□□□ -1.12
COL6A3-205ENST00000392004 FBLN7Q53RD9 439 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 PRR31Q5SQ13 230 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 TMEM116Q8NCL8 245 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 MGST2Q99735 147 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 MRPS16Q9Y3D3 137 aaKnown RBP8.07□□□□□ -1.12
COL6A3-205ENST00000392004 HCFC1P51610 2035 aa8.07□□□□□ -1.12
COL6A3-205ENST00000392004 RNASEKQ6P5S7 137 aaKnown RBP8.06□□□□□ -1.12
COL6A3-205ENST00000392004 GTSCR1Q86UQ5 136 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 ST6GALNAC6Q969X2 333 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 IGLC7A0M8Q6 106 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 H0Y8G0 127 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 OVOL1O14753 267 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 DEFB131AP59861 70 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 C2orf83Q53S99 150 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 Q6ZSV7 163 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 STHQ8IWL8 128 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 RNASE7Q9H1E1 156 aaKnown RBP8.06□□□□□ -1.12
COL6A3-205ENST00000392004 OSTCQ9NRP0 149 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 V9GYV3 84 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 P0C879 139 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 HIST1H1EP10412 219 aaKnown RBP8.06□□□□□ -1.12
COL6A3-205ENST00000392004 IBA57Q5T440 356 aaKnown RBP8.06□□□□□ -1.12
COL6A3-205ENST00000392004 FAM71F2Q6NXP2 309 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 CTRLP40313 264 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 TMEM136Q6ZRR5 245 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 RNF182Q8N6D2 247 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 TMEM158Q8WZ71 300 aa8.06□□□□□ -1.12
COL6A3-205ENST00000392004 TRAV9-2A0A087WT02 112 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 FRMD6-AS1P0C7T7 363 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 PPIFP30405 207 aaKnown RBP8.05□□□□□ -1.12
COL6A3-205ENST00000392004 RAX2Q96IS3 184 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 USMG5Q96IX5 58 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 TRAV8-1A0A0A6YYK1 113 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 LINC01619G3V211 115 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 CDKN1BP46527 198 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 FAM74A4Q5TZK3 123 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 LCN12Q6JVE5 192 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 C11orf52Q96A22 123 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 ZNF48Q96MX3 618 aaPredicted RBP8.05□□□□□ -1.12
COL6A3-205ENST00000392004 RCHY1Q96PM5 261 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 CLPSL1A2RUU4 121 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 Q8TAT8 98 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 TSKUQ8WUA8 353 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 ARL2-SNX15V9GYD0 113 aa8.05□□□□□ -1.12
COL6A3-205ENST00000392004 SMIM17P0DL12 118 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 RBX1P62877 108 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 Q6YL49 198 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 DEFB104AQ8WTQ1 72 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 DAZ1Q9NQZ3 744 aaKnown RBP8.04□□□□□ -1.12
COL6A3-205ENST00000392004 BRWD1-AS2P59051 145 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 DEFB1P60022 68 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 FAM162BQ5T6X4 162 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 SIGLEC15Q6ZMC9 328 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 Q6ZVH6 145 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 AJUBAQ96IF1 538 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 TRBV7-1A0A0A6YYK4 115 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 A6NDX4 124 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 C18orf65Q6ZTR6 163 aa8.04□□□□□ -1.12
COL6A3-205ENST00000392004 IGHV4OR15-8A0A075B7B6 117 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 A0A087WW49 117 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 IGKV2-40A0A087WW87 121 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-205ENST00000392004 IZUMO1RA6ND01 250 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 IGKV2D-40P01614 121 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-205ENST00000392004 RNASE4P34096 147 aaKnown RBP8.03□□□□□ -1.12
COL6A3-205ENST00000392004 RRN3P1Q2M238 152 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 LINC01587Q99440 93 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 XCL2Q9UBD3 114 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 ODF3BA8MYP8 253 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 CHEK1O14757 476 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 NIT1Q86X76 327 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 MRPL36Q9P0J6 103 aaKnown RBP8.03□□□□□ -1.12
COL6A3-205ENST00000392004 TSSC4Q9Y5U2 329 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-205ENST00000392004 VWC2LB2RUY7 222 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 ISLRO14498 428 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 MGPP08493 103 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 Q8N976 141 aa8.03□□□□□ -1.12
COL6A3-205ENST00000392004 MRPL27Q9P0M9 148 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms