RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CFHR4Q92496 578 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 RAB1BQ9H0U4 201 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 MS4A6AQ9H2W1 248 aa9.47□□□□□ -0.89
CLIP3-201ENST00000360535 PRSS1P07477 247 aa9.46□□□□□ -0.89
CLIP3-201ENST00000360535 RPL7P18124 248 aaKnown RBP9.46□□□□□ -0.89
CLIP3-201ENST00000360535 OCIAD2Q56VL3 154 aa9.46□□□□□ -0.89
CLIP3-201ENST00000360535 LINC00527Q9UJ94 153 aa9.46□□□□□ -0.89
CLIP3-201ENST00000360535 H3BUT2 72 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 SPRY2O43597 315 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 VMO1Q7Z5L0 202 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 LYPD1Q8N2G4 141 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 IFI27L1Q96BM0 104 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 IGLV11-55A0A075B6I3 123 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 C16orf54Q6UWD8 224 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 VKORC1Q9BQB6 163 aa9.46□□□□□ -0.9
CLIP3-201ENST00000360535 F8W735 103 aaPredicted RBP9.45□□□□□ -0.9
CLIP3-201ENST00000360535 K7EMI3 77 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 K7EP13 123 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 HBDP02042 147 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 CLEC3BP05452 202 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 PIP4P2Q8N4L2 257 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 GAGE10A6NGK3 116 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 CTSGP08311 255 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 ZNF562Q6V9R5 426 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 UFC1Q9Y3C8 167 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 SMAD5-AS1Q9Y6J3 95 aa9.45□□□□□ -0.9
CLIP3-201ENST00000360535 IGHV3OR16-10A0A075B7F0 116 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 CD5LO43866 347 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 C15orf32Q32M92 178 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 Q6AWC8 147 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 CLEC19AQ6UXS0 136 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 RNF5Q99942 180 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 GAGE12BA1L429 117 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 G3V318 75 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 LEPP41159 167 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 Q6ZQT7 251 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 IL17RELQ6ZVW7 336 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 S100A7AQ86SG5 101 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 MEGF9Q9H1U4 602 aa9.44□□□□□ -0.9
CLIP3-201ENST00000360535 IGKV3-7A0A075B6H7 116 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 A1L4Q6 167 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 CSPG4Q6UVK1 2322 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 DOPEY2Q9Y3R5 2298 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 TRAV26-2A0A0B4J265 109 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 A0A1B0GW15 77 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 PEF1Q9UBV8 284 aaKnown RBP9.43□□□□□ -0.9
CLIP3-201ENST00000360535 LINC01548A6NM66 108 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 SAP30O75446 220 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 ZFP36P26651 326 aaKnown RBP9.43□□□□□ -0.9
CLIP3-201ENST00000360535 BMI1P35226 326 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 PAX2Q02962 417 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 OR11H6Q8NGC7 330 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 DEFB104AQ8WTQ1 72 aa9.43□□□□□ -0.9
CLIP3-201ENST00000360535 NDUFA3O95167 84 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 GCSHP23434 173 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 PRTN3P24158 256 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 PDE6HQ13956 83 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 K7ERU9 68 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 ZNF493Q6ZR52 646 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 NPBQ8NG41 125 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 MAP1LC3AQ9H492 121 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 SORL1Q92673 2214 aa9.42□□□□□ -0.9
CLIP3-201ENST00000360535 IGHV7-81A0A0B4J1V7 117 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 KIR3DS1Q14943 382 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 GTSCR1Q86UQ5 136 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 LY6G5BQ8NDX9 201 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 FOXC2Q99958 501 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 KLK15Q9H2R5 256 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 TRBV6-1A0A0K0K1D8 114 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 FABP5P3A8MUU1 101 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 SRSF8Q9BRL6 282 aaKnown RBP9.41□□□□□ -0.9
CLIP3-201ENST00000360535 IGHG4P01861 327 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 TMEM219Q86XT9 240 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 TMEM160Q9NX00 188 aa9.41□□□□□ -0.9
CLIP3-201ENST00000360535 FBLL1A6NHQ2 334 aaKnown RBP9.4□□□□□ -0.9
CLIP3-201ENST00000360535 SMAD7O15105 426 aaKnown RBP9.4□□□□□ -0.9
CLIP3-201ENST00000360535 ATP6V0E1O15342 81 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 TRGV3P03979 118 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 AGRNO00468 2067 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 TNFRSF6BO95407 300 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 FGF6P10767 208 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 DEFB1P60022 68 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 CCDC144NLQ6NUI1 221 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 TTC9CQ8N5M4 171 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 JMJD8Q96S16 334 aa9.4□□□□□ -0.9
CLIP3-201ENST00000360535 CREBBPQ92793 2442 aa9.4□□□□□ -0.91
CLIP3-201ENST00000360535 GOSR1O95249 250 aa9.4□□□□□ -0.91
CLIP3-201ENST00000360535 LGALS9BQ3B8N2 356 aa9.4□□□□□ -0.91
CLIP3-201ENST00000360535 LGALS9CQ6DKI2 356 aa9.4□□□□□ -0.91
CLIP3-201ENST00000360535 TMEM158Q8WZ71 300 aa9.4□□□□□ -0.91
CLIP3-201ENST00000360535 IGKV2D-26A0A0A0MRZ7 120 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 A6NDN8 102 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 SCGB2A1O75556 95 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 CSTL1Q9H114 145 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 FCER1GP30273 86 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 CLEC2AQ6UVW9 174 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 UBTD1Q9HAC8 227 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 HIF1ANQ9NWT6 349 aa9.39□□□□□ -0.91
CLIP3-201ENST00000360535 K7ENP7 123 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 PPBPP02775 128 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms