RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CYSLTR1Q9Y271 337 aa7.97□□□□□ -1.13
SYNE1-203ENST00000354674 AMMECR1Q9Y4X0 333 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-203ENST00000354674 H3BVH4 76 aa7.97□□□□□ -1.13
SYNE1-203ENST00000354674 SMAD7O15105 426 aaKnown RBP7.97□□□□□ -1.13
SYNE1-203ENST00000354674 Q6ZUT4 128 aa7.97□□□□□ -1.13
SYNE1-203ENST00000354674 FAM90A9PA6NNJ1 464 aa7.96□□□□□ -1.13
SYNE1-203ENST00000354674 POU2AF1Q16633 256 aa7.96□□□□□ -1.13
SYNE1-203ENST00000354674 TM2D2Q9BX73 214 aa7.96□□□□□ -1.13
SYNE1-203ENST00000354674 CENPEQ02224 2701 aa7.96□□□□□ -1.13
SYNE1-203ENST00000354674 GCN1Q92616 2671 aaKnown RBP7.96□□□□□ -1.13
SYNE1-203ENST00000354674 AKAP6Q13023 2319 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 TRAV3A0A0B4J244 114 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 PYYP10082 97 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 COX7A1P24310 79 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 NFE4Q86UQ8 179 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 MS4A6AQ9H2W1 248 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 CSMD1Q96PZ7 3565 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 ARHGAP32A7KAX9 2087 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 C9JCJ5 164 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 PRB3Q04118 309 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-203ENST00000354674 MORN5Q5VZ52 161 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 Q71RC1 249 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-203ENST00000354674 OR4A16Q8NH70 328 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 FAM110AQ9BQ89 295 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 DKK2Q9UBU2 259 aa7.96□□□□□ -1.14
SYNE1-203ENST00000354674 DOPEY2Q9Y3R5 2298 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 IGKV2D-26A0A0A0MRZ7 120 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 TMEM189A5PLL7 270 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 CRXO43186 299 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-203ENST00000354674 CRYGCP07315 174 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 MSMBP08118 114 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 UBE2E1P51965 193 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 KLRD1Q13241 179 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 PET117Q6UWS5 81 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 ABCA2Q9BZC7 2435 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 B4DSR2 109 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 OR9G9P0C7N8 305 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 OPRK1P41145 380 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 PDPNQ86YL7 162 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 AJUBAQ96IF1 538 aa7.95□□□□□ -1.14
SYNE1-203ENST00000354674 IGHV1-3A0A0C4DH29 117 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 LOC107984156A0A0G2JMH3 177 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 IGKV1-16P04430 117 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 REG1BP48304 166 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 MINOS1Q5TGZ0 78 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 ARL17AQ8IVW1 177 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 GTSF1Q8WW33 167 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 GPR82Q96P67 336 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 DPM3Q9P2X0 92 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 MINOS1-NBL1R4GNA1 71 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 PDZD2O15018 2839 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 A0A1W2PPI3 338 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 FAM90A26D6RGX4 464 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 LINC00322Q6ZN03 302 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-203ENST00000354674 FOXI2Q6ZQN5 318 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 PIP4P2Q8N4L2 257 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 TEX29Q8N6K0 151 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 AP5S1Q9NUS5 200 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 OOSP1A8MZH6 123 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 IFI27P40305 119 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-203ENST00000354674 KLF5Q13887 457 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-203ENST00000354674 LINC01545Q5VT33 79 aa7.94□□□□□ -1.14
SYNE1-203ENST00000354674 SRRM4A7MD48 611 aaKnown RBP7.93□□□□□ -1.14
SYNE1-203ENST00000354674 F8W1H4 67 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 HBBP68871 147 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 GTSCR1Q86UQ5 136 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 LINC01356Q8N9X3 169 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 CFHR4Q92496 578 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 ZNF747Q9BV97 191 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 TNFRSF18Q9Y5U5 241 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 IGLV2-23P01705 113 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 FOXI1Q12951 378 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 ZFAND6Q6FIF0 208 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 OR4C13Q8NGP0 309 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 RPEQ96AT9 228 aa7.93□□□□□ -1.14
SYNE1-203ENST00000354674 PTPN13Q12923 2485 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 CENPVL3A0A0U1RRI6 287 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 PSMB2P49721 201 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 ERVK-16P61578 105 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 UBE2L3P68036 154 aaKnown RBP7.92□□□□□ -1.14
SYNE1-203ENST00000354674 FLYWCH2Q96CP2 140 aaKnown RBP7.92□□□□□ -1.14
SYNE1-203ENST00000354674 ANKRD17O75179 2603 aaKnown RBP7.92□□□□□ -1.14
SYNE1-203ENST00000354674 SPG11Q96JI7 2443 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 IGLL5B9A064 214 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 FNDC10F2Z333 226 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 NHLRC4P0CG21 123 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-203ENST00000354674 COX19Q49B96 90 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 FAM159AQ6UWV7 190 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 RNF5Q99942 180 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 FOXC2Q99958 501 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 RNF223E7ERA6 249 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 NPIPB6E9PJ23 425 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 DYNAPQ8N1N2 210 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 ZNF503Q96F45 646 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 Q96MF0 132 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 CHAC1Q9BUX1 264 aa7.92□□□□□ -1.14
SYNE1-203ENST00000354674 TET2Q6N021 2002 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-203ENST00000354674 TEPPQ6URK8 271 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 TMEM14BQ9NUH8 114 aa7.91□□□□□ -1.14
SYNE1-203ENST00000354674 FOXA2Q9Y261 457 aaPredicted RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms