RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 IGHV4-39P01824 125 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 SRSF1Q07955 248 aaKnown RBP eCLIP12.48□□□□□ -0.41
USHBP1-202ENST00000324554 AMN1Q8IY45 258 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 AJUBAQ96IF1 538 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 RABAC1Q9UI14 185 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 SMAD5-AS1Q9Y6J3 95 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 TMEM189A5PLL7 270 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 SCGB2A1O75556 95 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 RELQ04864 619 aaPredicted RBP12.48□□□□□ -0.41
USHBP1-202ENST00000324554 OR10AG1Q8NH19 301 aa12.48□□□□□ -0.41
USHBP1-202ENST00000324554 IGHV2-70DA0A0C4DH43 119 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 IGFL4Q6B9Z1 124 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 COX8CQ7Z4L0 72 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 MS4A6AQ9H2W1 248 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 SIGLEC8Q9NYZ4 499 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 A0A087X0K7 114 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 TAX1BP3O14907 124 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 Q8TAT8 98 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 PRR25Q96S07 402 aa12.47□□□□□ -0.41
USHBP1-202ENST00000324554 POLQO75417 2590 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 IGHV3OR16-8A0A075B7F1 116 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 IGHV3-35A0A0C4DH35 117 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 IGHG4P01861 327 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 UBE2E1P51965 193 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 FAM104BQ5XKR9 115 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 PIP4P2Q8N4L2 257 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 ARL6IP6Q8N6S5 226 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 RNASE8Q8TDE3 154 aaKnown RBP12.46□□□□□ -0.41
USHBP1-202ENST00000324554 CCL19Q99731 98 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 U3KQK5 164 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 FBN2P35556 2912 aa12.46□□□□□ -0.41
USHBP1-202ENST00000324554 UBR5O95071 2799 aaPredicted RBP12.46□□□□□ -0.41
USHBP1-202ENST00000324554 ZNF80P51504 273 aaPredicted RBP12.46□□□□□ -0.42
USHBP1-202ENST00000324554 FXYD7P58549 80 aa12.46□□□□□ -0.42
USHBP1-202ENST00000324554 FAM110DQ8TAY7 271 aaPredicted RBP12.46□□□□□ -0.42
USHBP1-202ENST00000324554 HLA-DMBP28068 263 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 ECSCRQ19T08 205 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 C15orf32Q32M92 178 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 SAPCD1Q5SSQ6 148 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 ZNF575Q86XF7 245 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 ZNF502Q8TBZ5 544 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 PRELID3AQ96N28 172 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 VGLL1Q99990 258 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 SNAI2O43623 268 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 GPR183P32249 361 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 SAA4P35542 130 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 MRPL51Q4U2R6 128 aaKnown RBP12.45□□□□□ -0.42
USHBP1-202ENST00000324554 DEFB125Q8N687 156 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 OR8A1Q8NGG7 326 aa12.45□□□□□ -0.42
USHBP1-202ENST00000324554 ATP6V0E1O15342 81 aa12.44□□□□□ -0.42
USHBP1-202ENST00000324554 C2orf91Q6ZV80 131 aa12.44□□□□□ -0.42
USHBP1-202ENST00000324554 CBY1Q9Y3M2 126 aa12.44□□□□□ -0.42
USHBP1-202ENST00000324554 COX8AP10176 69 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 VAMP3Q15836 100 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 C12orf54Q6X4T0 127 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 ORMDL3Q8N138 153 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 FBLL1A6NHQ2 334 aaKnown RBP12.43□□□□□ -0.42
USHBP1-202ENST00000324554 SMKR1H3BMG3 65 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 HIST1H1AQ02539 215 aaPredicted RBP12.43□□□□□ -0.42
USHBP1-202ENST00000324554 KLK9Q2XQG4 91 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 ZFAND3Q9H8U3 227 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 KLK9Q9UKQ9 250 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 CHD6Q8TD26 2715 aa12.43□□□□□ -0.42
USHBP1-202ENST00000324554 LMO4P61968 165 aa12.42□□□□□ -0.42
USHBP1-202ENST00000324554 RHOGP84095 191 aa12.42□□□□□ -0.42
USHBP1-202ENST00000324554 CLEC3BP05452 202 aa12.42□□□□□ -0.42
USHBP1-202ENST00000324554 PAX8Q06710 450 aa12.42□□□□□ -0.42
USHBP1-202ENST00000324554 S100A7P31151 101 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 ANKRD39Q53RE8 183 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 OR4C5Q8NGB2 326 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 CBY3A6NI87 242 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 BUB3O43684 328 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 NPYP01303 97 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 ATP5J2P56134 94 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 TWIST1Q15672 202 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 FER1L6-AS1Q8NA97 138 aa12.41□□□□□ -0.42
USHBP1-202ENST00000324554 G3V318 75 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 K7EP13 123 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 IGLC6P0CF74 106 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 FGF6P10767 208 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 CCDC140Q96MF4 163 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 PSMG3-AS1Q96PY0 264 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 MSRB1Q9NZV6 116 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 LINC01548A6NM66 108 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 BMI1P35226 326 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 RBX1P62877 108 aa12.4□□□□□ -0.42
USHBP1-202ENST00000324554 ABCA2Q9BZC7 2435 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 CENPVL3A0A0U1RRI6 287 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 CKS2P33552 79 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 TCTAP57738 103 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 CACNG7P62955 275 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 IGHV3OR16-10A0A075B7F0 116 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 CLPSL1A2RUU4 121 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 RPS20P60866 119 aaKnown RBP12.39□□□□□ -0.43
USHBP1-202ENST00000324554 CLEC19AQ6UXS0 136 aa12.39□□□□□ -0.43
USHBP1-202ENST00000324554 IGHV4-61A0A0C4DH41 118 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 PRAC2D3DTV9 90 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 NPFFO15130 113 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 GAS8-AS1O95177 125 aa12.38□□□□□ -0.43
USHBP1-202ENST00000324554 GOSR1O95249 250 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms