RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 IGHV3OR16-13A0A075B7E8 117 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 IGHV3-74A0A0B4J1X5 117 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 NPIPB5A8MRT5 1133 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 CT45A10P0DMU9 189 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 JMJD8Q96S16 334 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 PGPEP1Q9NXJ5 209 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 C1RLQ9NZP8 487 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 PPIFP30405 207 aaKnown RBP7.87□□□□□ -1.15
LIG3-201ENST00000262327 NDPQ00604 133 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 ZNF672Q499Z4 452 aaPredicted RBP7.87□□□□□ -1.15
LIG3-201ENST00000262327 CCDC144NLQ6NUI1 221 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 PET117Q6UWS5 81 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 GEMIN7Q9H840 131 aaKnown RBP7.87□□□□□ -1.15
LIG3-201ENST00000262327 SIGLEC8Q9NYZ4 499 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 A0A096LNJ9 63 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 IGHV3-66A0A0C4DH42 116 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 TMEM189A5PLL7 270 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 SH2D1AO60880 128 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 GAS8-AS1O95177 125 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 HOXB4P17483 251 aaPredicted RBP7.86□□□□□ -1.15
LIG3-201ENST00000262327 NPFFR1Q9GZQ6 430 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 MSRB1Q9NZV6 116 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 TEX48A0A1B0GUV7 120 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 B9A039 149 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 NBR2O15453 112 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 OR10AG1Q8NH19 301 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 C18orf15Q96N68 181 aa7.86□□□□□ -1.15
LIG3-201ENST00000262327 TSSC4Q9Y5U2 329 aaPredicted RBP7.86□□□□□ -1.15
LIG3-201ENST00000262327 SMIM17P0DL12 118 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 ZNF80P51504 273 aaPredicted RBP7.85□□□□□ -1.15
LIG3-201ENST00000262327 CACNG7P62955 275 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 LINC01545Q5VT33 79 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 PIP4P2Q8N4L2 257 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 PRELID3AQ96N28 172 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 AP1S3Q96PC3 154 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 VGLL1Q99990 258 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 SS18L2Q9UHA2 77 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 GAGE12HA6NDE8 117 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 K7EP34 96 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 MRPS12O15235 138 aaKnown RBP7.85□□□□□ -1.15
LIG3-201ENST00000262327 ZNF207O43670 478 aaKnown RBP7.85□□□□□ -1.15
LIG3-201ENST00000262327 GPR183P32249 361 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 TWIST1Q15672 202 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 C2orf91Q6ZV80 131 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 DYNAPQ8N1N2 210 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 FANCD2OSQ96PS1 177 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 AAMDCQ9H7C9 122 aa7.85□□□□□ -1.15
LIG3-201ENST00000262327 LY6LH3BQJ8 138 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 H3BUT2 72 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 EGR2P11161 476 aaPredicted RBP7.84□□□□□ -1.15
LIG3-201ENST00000262327 CSN1S1P47710 185 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 TM4SF20Q53R12 229 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 VPS13CQ709C8 3753 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 IGHV3-49A0A0A0MS15 119 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 ERCC8Q13216 396 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 MRPL51Q4U2R6 128 aaKnown RBP7.84□□□□□ -1.15
LIG3-201ENST00000262327 DPM3Q9P2X0 92 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 ACACBO00763 2458 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 ITPR1Q14643 2758 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 NPYP01303 97 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 CD300EQ496F6 205 aaPredicted RBP7.84□□□□□ -1.15
LIG3-201ENST00000262327 OR2K2Q8NGT1 345 aa7.84□□□□□ -1.15
LIG3-201ENST00000262327 BBC3Q96PG8 261 aaPredicted RBP7.84□□□□□ -1.15
LIG3-201ENST00000262327 F8W735 103 aaPredicted RBP7.83□□□□□ -1.16
LIG3-201ENST00000262327 ORM1P02763 201 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 EVI2AP22794 236 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 GATA3P23771 443 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 TCTEX1D4Q5JR98 221 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 ZNF843Q8N446 348 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 RAB37Q96AX2 223 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 MRAP2Q96G30 205 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 COX8AP10176 69 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 GATA1P15976 413 aaPredicted RBP7.83□□□□□ -1.16
LIG3-201ENST00000262327 CKS2P33552 79 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 NMUP48645 174 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 HERV-K104P63124 156 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 ODF1Q14990 250 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 FAM104BQ5XKR9 115 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 RNF182Q8N6D2 247 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 CFHR4Q92496 578 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 TTTY13Q9BZ97 58 aa7.83□□□□□ -1.16
LIG3-201ENST00000262327 C9orf118A6NHY6 69 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 MFAP4P55083 255 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 HIST1H1AQ02539 215 aaPredicted RBP7.82□□□□□ -1.16
LIG3-201ENST00000262327 C21orf62Q9NYP8 219 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 RABAC1Q9UI14 185 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 WI2-2373I1.2A0A1W2PRP0 233 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 PRAC2D3DTV9 90 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 PCP2Q8IVA1 136 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 ORMDL3Q8N138 153 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 DKK2Q9UBU2 259 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 TSPAN13O95857 204 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 ARPC1AQ92747 370 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 PRR25Q96S07 402 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 SMAD5-AS1Q9Y6J3 95 aa7.82□□□□□ -1.16
LIG3-201ENST00000262327 MS4A6AQ9H2W1 248 aa7.81□□□□□ -1.16
LIG3-201ENST00000262327 IGLV11-55A0A075B6I3 123 aa7.81□□□□□ -1.16
LIG3-201ENST00000262327 K7EMI3 77 aa7.81□□□□□ -1.16
LIG3-201ENST00000262327 NDUFS7O75251 213 aa7.81□□□□□ -1.16
LIG3-201ENST00000262327 ECSCRQ19T08 205 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms