RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GLMPQ8WWB7 406 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 PTH2Q96A98 100 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 SCNM1Q9BWG6 230 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 LYNX1G3V0Z9 82 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 SMIM17P0DL12 118 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 LYNX1P0DP58 116 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 EFNA4P52798 201 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 ODF1Q14990 250 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 CEND1Q8N111 149 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 CYSLTR1Q9Y271 337 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 CRYBA4P53673 196 aa11.27□□□□□ -0.6
SDC1-201ENST00000254351 AAMDCQ9H7C9 122 aa11.27□□□□□ -0.6
SDC1-201ENST00000254351 UFC1Q9Y3C8 167 aa11.27□□□□□ -0.6
SDC1-201ENST00000254351 NDUFB3O43676 98 aa11.27□□□□□ -0.61
SDC1-201ENST00000254351 CRYGCP07315 174 aa11.27□□□□□ -0.61
SDC1-201ENST00000254351 GAGE13Q4V321 117 aa11.27□□□□□ -0.61
SDC1-201ENST00000254351 LOC107984156A0A0G2JMH3 177 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 J3QR89 54 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 ERCC8Q13216 396 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 PPP1R27Q86WC6 154 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 ARL17AQ8IVW1 177 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 MAP1LC3AQ9H492 121 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 CTSZQ9UBR2 303 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 SIGLEC9Q9Y336 463 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 FOXI2Q6ZQN5 318 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 C1orf162Q8NEQ5 155 aaPredicted RBP11.26□□□□□ -0.61
SDC1-201ENST00000254351 RNF125Q96EQ8 232 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 C12orf74Q32Q52 190 aa11.26□□□□□ -0.61
SDC1-201ENST00000254351 SIVA1O15304 175 aa11.25□□□□□ -0.61
SDC1-201ENST00000254351 TNFRSF6BO95407 300 aa11.25□□□□□ -0.61
SDC1-201ENST00000254351 SCGB2A2Q13296 93 aa11.25□□□□□ -0.61
SDC1-201ENST00000254351 SYT8Q8NBV8 401 aa11.25□□□□□ -0.61
SDC1-201ENST00000254351 PHLDA1Q8WV24 401 aaPredicted RBP11.25□□□□□ -0.61
SDC1-201ENST00000254351 LINC01548A6NM66 108 aa11.25□□□□□ -0.61
SDC1-201ENST00000254351 APOMO95445 188 aa11.25□□□□□ -0.61
SDC1-201ENST00000254351 IGHV3-49A0A0A0MS15 119 aa11.24□□□□□ -0.61
SDC1-201ENST00000254351 NDUFS8O00217 210 aa11.24□□□□□ -0.61
SDC1-201ENST00000254351 Q6ZQT7 251 aa11.24□□□□□ -0.61
SDC1-201ENST00000254351 GEMIN7Q9H840 131 aaKnown RBP11.24□□□□□ -0.61
SDC1-201ENST00000254351 SHANK2-AS3Q9BTD1 123 aa11.24□□□□□ -0.61
SDC1-201ENST00000254351 CUBNO60494 3623 aa11.24□□□□□ -0.61
SDC1-201ENST00000254351 ANXA2RQ3ZCQ2 193 aa11.24□□□□□ -0.61
SDC1-201ENST00000254351 ANKRD11Q6UB99 2663 aaPredicted RBP11.24□□□□□ -0.61
SDC1-201ENST00000254351 ZNF491Q8N8L2 437 aa11.24□□□□□ -0.61
SDC1-201ENST00000254351 DPM2O94777 84 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 HES1Q14469 280 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 IGF2-ASQ6U949 168 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 RNF182Q8N6D2 247 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 DPF1Q92782 380 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 IGLV3-9A0A075B6K5 115 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 TEX22C9J3V5 150 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 TRGV3P03979 118 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 GATA3P23771 443 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 DEFB109BQ30KR1 87 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 ZNF493Q6ZR52 646 aa11.23□□□□□ -0.61
SDC1-201ENST00000254351 H3BVH4 76 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 CD40P25942 277 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 PAX8Q06710 450 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 C3orf36Q3SXR2 165 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 E9PLD3 99 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 F8W1H4 67 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 I3L2K1 104 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 IGHV1-8P0DP01 117 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 PSMB2P49721 201 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 EMP1P54849 157 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 MT-ATP8P03928 68 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 GATA4P43694 442 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 TTC9CQ8N5M4 171 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 MRPL16Q9NX20 251 aaKnown RBP11.22□□□□□ -0.61
SDC1-201ENST00000254351 PGPEP1Q9NXJ5 209 aa11.22□□□□□ -0.61
SDC1-201ENST00000254351 IGHG3P01860 377 aa11.21□□□□□ -0.61
SDC1-201ENST00000254351 SPINK8P0C7L1 97 aa11.21□□□□□ -0.61
SDC1-201ENST00000254351 MC5RP33032 325 aa11.21□□□□□ -0.61
SDC1-201ENST00000254351 PRR25Q96S07 402 aa11.21□□□□□ -0.61
SDC1-201ENST00000254351 A0A1B0GW15 77 aa11.21□□□□□ -0.62
SDC1-201ENST00000254351 LOXP28300 417 aaPredicted RBP11.21□□□□□ -0.62
SDC1-201ENST00000254351 Q6AWC8 147 aa11.21□□□□□ -0.62
SDC1-201ENST00000254351 RPEQ96AT9 228 aa11.21□□□□□ -0.62
SDC1-201ENST00000254351 RNF185Q96GF1 192 aa11.21□□□□□ -0.62
SDC1-201ENST00000254351 COL12A1Q99715 3063 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 K7EIM0 57 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 LINC00574Q9H8X3 128 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 U3KQK5 164 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 PTPRZ1P23471 2315 aaPredicted RBP11.2□□□□□ -0.62
SDC1-201ENST00000254351 IGHV1-3A0A0C4DH29 117 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 PRAC2D3DTV9 90 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 INS-IGF2F8WCM5 200 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 ZFP2Q6ZN57 461 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 DTX2Q86UW9 622 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 TMEM14CQ9P0S9 112 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 H3BRN7 92 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 HOXB4P17483 251 aaPredicted RBP11.2□□□□□ -0.62
SDC1-201ENST00000254351 MYOZ3Q8TDC0 251 aa11.2□□□□□ -0.62
SDC1-201ENST00000254351 C17orf100A8MU93 164 aa11.19□□□□□ -0.62
SDC1-201ENST00000254351 ZFHX3Q15911 3703 aa11.19□□□□□ -0.62
SDC1-201ENST00000254351 HLA-DRB4P13762 266 aa11.19□□□□□ -0.62
SDC1-201ENST00000254351 VKORC1Q9BQB6 163 aa11.19□□□□□ -0.62
SDC1-201ENST00000254351 HLA-DRB4X5D2U9 266 aa11.19□□□□□ -0.62
SDC1-201ENST00000254351 CELSR1Q9NYQ6 3014 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 NCBP2LA6PVI3 153 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms