RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SERF1AO75920 110 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 P01737 135 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 MT-ND6P03923 174 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 KIAA1644Q3SXP7 199 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 IGFL4Q6B9Z1 124 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 TMEM75Q8N9X5 138 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 PRSS22Q9GZN4 317 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 RPP21Q9H633 154 aaKnown RBP12.11□□□□□ -0.47
CLN3-251ENST00000636853 TRGV3P03979 118 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 CRIP2P52943 208 aaPredicted RBP12.11□□□□□ -0.47
CLN3-251ENST00000636853 WDR73Q6P4I2 378 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 TCF24Q7RTU0 167 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 DAZAP1Q96EP5 407 aaKnown RBP12.11□□□□□ -0.47
CLN3-251ENST00000636853 ZNF492Q9P255 531 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 PSG8Q9UQ74 426 aa12.11□□□□□ -0.47
CLN3-251ENST00000636853 GATA3P23771 443 aa12.1□□□□□ -0.47
CLN3-251ENST00000636853 PSG3Q16557 428 aa12.1□□□□□ -0.47
CLN3-251ENST00000636853 ZNF331Q9NQX6 463 aaPredicted RBP12.1□□□□□ -0.47
CLN3-251ENST00000636853 USP9YO00507 2555 aaPredicted RBP12.1□□□□□ -0.47
CLN3-251ENST00000636853 IGHV3OR16-13A0A075B7E8 117 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 IGHV3-74A0A0B4J1X5 117 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 CLPSL1A2RUU4 121 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 ZNF785A8K8V0 405 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 K7EQM0 130 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 ZNF207O43670 478 aaKnown RBP12.09□□□□□ -0.47
CLN3-251ENST00000636853 CTRLP40313 264 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 OR10J3Q5JRS4 329 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 CYB5R2Q6BCY4 276 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 ZC2HC1AQ96GY0 325 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 IGHV3-49A0A0A0MS15 119 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 TRBV6-1A0A0K0K1D8 114 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 RNF223E7ERA6 249 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 TGFAP01135 160 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 IGHG2P01859 326 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 IGF1P05019 195 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 HLA-DMBP28068 263 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 PSG9Q00887 426 aa12.09□□□□□ -0.47
CLN3-251ENST00000636853 F2Z2F3 143 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 BUB3O43684 328 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 APOHP02749 345 aaPredicted RBP12.08□□□□□ -0.48
CLN3-251ENST00000636853 GPX1P07203 203 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 TDRG1Q3Y452 100 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 BAGE3Q86Y29 109 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 GTSF1Q8WW33 167 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 PTPN13Q12923 2485 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 IGKV2-40A0A087WW87 121 aaPredicted RBP12.08□□□□□ -0.48
CLN3-251ENST00000636853 FAM223BA6NKX1 122 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 IGKV2D-40P01614 121 aaPredicted RBP12.08□□□□□ -0.48
CLN3-251ENST00000636853 CSN1S1P47710 185 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 GDF5OSQ5U4N7 250 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 FAM223AQ8IWN6 122 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 SIGLECL1Q8N7X8 197 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 Q8N976 141 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 SAMD10Q9BYL1 202 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 PAM16Q9Y3D7 125 aa12.08□□□□□ -0.48
CLN3-251ENST00000636853 A8MWL6 223 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 HLA-DQA1P01909 254 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 PPIFP30405 207 aaKnown RBP12.07□□□□□ -0.48
CLN3-251ENST00000636853 DEFB112Q30KQ8 113 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 TMEM190Q8WZ59 177 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 UQCR10Q9UDW1 63 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 TRBV12-3P01733 135 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 S100A7P31151 101 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 CAMPP49913 170 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 SLAQ13239 276 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 PRR31Q5SQ13 230 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 PGLYRP4Q96LB8 373 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 C8orf49Q96NF6 230 aa12.07□□□□□ -0.48
CLN3-251ENST00000636853 NPIPB6E9PJ23 425 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 IGHG4P01861 327 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 APCSP02743 223 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 CT83Q5H943 113 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 OR2D3Q8NGH3 330 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 WIPF2Q8TF74 440 aaPredicted RBP12.06□□□□□ -0.48
CLN3-251ENST00000636853 KLK15Q9H2R5 256 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 CHEK1O14757 476 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 IGHV4-59P01825 116 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 CRIP1P50238 77 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 ANKRD39Q53RE8 183 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 LCNL1Q6ZST4 164 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 ORAOV1Q8WV07 137 aa12.06□□□□□ -0.48
CLN3-251ENST00000636853 ZANQ9Y493 2812 aa12.05□□□□□ -0.48
CLN3-251ENST00000636853 RASL11AQ6T310 242 aa12.05□□□□□ -0.48
CLN3-251ENST00000636853 METTL26Q96S19 204 aa12.05□□□□□ -0.48
CLN3-251ENST00000636853 SSBP4Q9BWG4 385 aaPredicted RBP12.05□□□□□ -0.48
CLN3-251ENST00000636853 CR1P17927 2039 aa12.05□□□□□ -0.48
CLN3-251ENST00000636853 ZNF253O75346 499 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 IGHV3-11P01762 117 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 PF4V1P10720 104 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 SRIP30626 198 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 ARL3P36405 182 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 DEFB113Q30KQ7 82 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 KLHDC1Q8N7A1 406 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 KCNS1Q96KK3 526 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 ABCA12Q86UK0 2595 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 CD33P20138 364 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 RAB9AP51151 201 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 LOXL1Q08397 574 aaPredicted RBP12.04□□□□□ -0.48
CLN3-251ENST00000636853 DMRTA1Q5VZB9 504 aa12.04□□□□□ -0.48
CLN3-251ENST00000636853 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms