RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SCN3AQ9NY46 2000 aa0.85□□□□□ -2.27
SMCHD1-209ENST00000583441 TPRKBQ9Y3C4 175 aa0.85□□□□□ -2.27
SMCHD1-209ENST00000583441 MYH7BA7E2Y1 1941 aa0.85□□□□□ -2.27
SMCHD1-209ENST00000583441 NCOA6Q14686 2063 aaPredicted RBP0.84□□□□□ -2.27
SMCHD1-209ENST00000583441 TRAPPC8Q9Y2L5 1435 aa0.84□□□□□ -2.27
SMCHD1-209ENST00000583441 TRDV1A0A1B0GX56 115 aa0.84□□□□□ -2.27
SMCHD1-209ENST00000583441 MT-ND6P03923 174 aa0.84□□□□□ -2.27
SMCHD1-209ENST00000583441 LINC00299Q6ZSB3 139 aa0.84□□□□□ -2.27
SMCHD1-209ENST00000583441 EFCAB11Q9BUY7 163 aa0.84□□□□□ -2.27
SMCHD1-209ENST00000583441 MYH10P35580 1976 aa0.84□□□□□ -2.28
SMCHD1-209ENST00000583441 COL1A1P02452 1464 aaPredicted RBP0.84□□□□□ -2.28
SMCHD1-209ENST00000583441 NUP98P52948 1817 aa0.84□□□□□ -2.28
SMCHD1-209ENST00000583441 UBR2Q8IWV8 1755 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 KIAA1107Q9UPP5 1409 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 A0A1B0GV72 72 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 A0A1W2PRE2 83 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 C9orf170A2RU37 121 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 C5orf67F2Z3F1 127 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 PPYP01298 95 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 FABP1P07148 127 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 FABP2P12104 132 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 MIR22HGQ0VDD5 57 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 FOXI2Q6ZQN5 318 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 DIRC1Q969H9 104 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 OR4C12Q96R67 309 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 WFDC10AQ9H1F0 79 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 SMPXQ9UHP9 88 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 DOCK4Q8N1I0 1966 aa0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 TNRC6AQ8NDV7 1962 aaKnown RBP0.83□□□□□ -2.28
SMCHD1-209ENST00000583441 PEAK1Q9H792 1746 aa0.82□□□□□ -2.28
SMCHD1-209ENST00000583441 FABP4P15090 132 aa0.82□□□□□ -2.28
SMCHD1-209ENST00000583441 SDC2P34741 201 aa0.82□□□□□ -2.28
SMCHD1-209ENST00000583441 TFAMQ00059 246 aaKnown RBP0.82□□□□□ -2.28
SMCHD1-209ENST00000583441 DIAPH2-AS1Q14236 149 aa0.82□□□□□ -2.28
SMCHD1-209ENST00000583441 VMA21Q3ZAQ7 101 aa0.82□□□□□ -2.28
SMCHD1-209ENST00000583441 TECPR2O15040 1411 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 C5orf58C9J3I9 102 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 TRACP01848 142 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 S100A11P31949 105 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 SBSPONQ8IVN8 264 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 LINC00269Q8N2A0 174 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 OR5H6Q8NGV6 325 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 CCL4L1Q8NHW4 92 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 GRPEL2Q8TAA5 225 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 LXNQ9BS40 222 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 MCM3APO60318 1980 aa0.81□□□□□ -2.28
SMCHD1-209ENST00000583441 FRMPD1Q5SYB0 1578 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 ZCCHC11Q5TAX3 1644 aaKnown RBP0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 TRAV23DV6A0A075B6W5 121 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 A0A0J9YY99 117 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 GABARAPH6UMI1 98 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 IFNA21P01568 189 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 TPT1P13693 172 aaKnown RBP0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 SRP9P49458 86 aaKnown RBP0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 TOMM20LQ6UXN7 152 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 OR5AK2Q8NH90 309 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 THEM6Q8WUY1 208 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 PRELID3AQ96N28 172 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 SELENOSQ9BQE4 189 aa0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 BOKQ9UMX3 212 aaPredicted RBP0.8□□□□□ -2.28
SMCHD1-209ENST00000583441 E9PCH4 1651 aa0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 PIK3C2AO00443 1686 aa0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 TRBV27A0A0K0K1C4 114 aa0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 H7BYZ3 331 aa0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 SAA1P0DJI8 122 aaPredicted RBP0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 LINC00305Q7Z4B0 112 aa0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 OR9Q1Q8NGQ5 310 aa0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 DDA1Q9BW61 102 aa0.79□□□□□ -2.28
SMCHD1-209ENST00000583441 ADGBQ8N7X0 1667 aa0.78□□□□□ -2.28
SMCHD1-209ENST00000583441 PGRMC1O00264 195 aaKnown RBP0.78□□□□□ -2.28
SMCHD1-209ENST00000583441 FREM3P0C091 2139 aa0.78□□□□□ -2.28
SMCHD1-209ENST00000583441 LSM3P62310 102 aaKnown RBP0.78□□□□□ -2.28
SMCHD1-209ENST00000583441 GLIPR1L1Q6UWM5 242 aa0.78□□□□□ -2.28
SMCHD1-209ENST00000583441 SMIM15Q7Z3B0 74 aa0.78□□□□□ -2.28
SMCHD1-209ENST00000583441 MED31Q9Y3C7 131 aa0.78□□□□□ -2.28
SMCHD1-209ENST00000583441 MGAMO43451 1857 aa0.78□□□□□ -2.29
SMCHD1-209ENST00000583441 TRAV13-1A0A0B4J241 112 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 TRBV7-6A0A0J9YX20 115 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 A6NN06 94 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 H3BMG7 143 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 MAXP61244 160 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 OCIAD2Q56VL3 154 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 TMEM128Q5BJH2 165 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 CASC2Q6XLA1 102 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 RMND5BQ96G75 393 aaPredicted RBP0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 CIB3Q96Q77 187 aaPredicted RBP0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 TAF9BQ9HBM6 251 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 ERBINQ96RT1 1412 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 MYO5AQ9Y4I1 1855 aaKnown RBP0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 TENM3Q9P273 2699 aa0.77□□□□□ -2.29
SMCHD1-209ENST00000583441 COL24A1Q17RW2 1714 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 BCL9O00512 1426 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 PDE6GP18545 87 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 POLR2HP52434 150 aaKnown RBP0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 FXYD4P59646 89 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 CCSMST1Q4G0I0 132 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 ATOH7Q8N100 152 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 C5orf17Q8NAS9 161 aa0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 SKA2Q8WVK7 121 aaPredicted RBP0.76□□□□□ -2.29
SMCHD1-209ENST00000583441 AP1S3Q96PC3 154 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms