RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 IGHV1-58A0A0C4DH39 117 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 TRBV7-6A0A0J9YX20 115 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 TCRBV4S1A1TA0A5B7 111 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 AIPO00170 330 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 IGLV3-1P01715 115 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 IGHV3-33P01772 117 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 CCL4P13236 92 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 ZNF25P17030 456 aaPredicted RBP0.27□□□□□ -2.37
SCFD1-216ENST00000555550 TMBIM6P55061 237 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 HBBP68871 147 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 TFAMQ00059 246 aaKnown RBP0.27□□□□□ -2.37
SCFD1-216ENST00000555550 SNCBQ16143 134 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 RTL8BQ17RB0 113 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 SCGB2B2Q4G0G5 96 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 GLIPR1L1Q6UWM5 242 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 TOMM20LQ6UXN7 152 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 ZCCHC23Q6ZST2 131 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 ARPINQ7Z6K5 226 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 LINC00471Q8N535 108 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 TEX47Q8TBZ9 253 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 CEP19Q96LK0 163 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 GPER1Q99527 375 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 GGACTQ9BVM4 153 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 CACYBPQ9HB71 228 aaKnown RBP0.27□□□□□ -2.37
SCFD1-216ENST00000555550 CDC42SE1Q9NRR8 79 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 ERBINQ96RT1 1412 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 KIAA1107Q9UPP5 1409 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 PEAK1Q9H792 1746 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 FER1L6Q2WGJ9 1857 aa0.27□□□□□ -2.37
SCFD1-216ENST00000555550 NUP210Q8TEM1 1887 aaPredicted RBP0.27□□□□□ -2.37
SCFD1-216ENST00000555550 CITO14578 2027 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 MYO18AQ92614 2054 aaKnown RBP0.26□□□□□ -2.37
SCFD1-216ENST00000555550 DOPEY1Q5JWR5 2465 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 TRAV27A0A087WT01 109 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 C9orf170A2RU37 121 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 MAP1LC3B2A6NCE7 125 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 A6NN06 94 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 C5orf67F2Z3F1 127 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 GABARAPH6UMI1 98 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 K7EIL1 84 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 BANF1O75531 89 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 MPV17LQ2QL34 196 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 BCL2L15Q5TBC7 163 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 GDF5OSQ5U4N7 250 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 DCUN1D2Q6PH85 259 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 FOXI2Q6ZQN5 318 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 CLECL1Q8IZS7 167 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 OR5AS1Q8N127 324 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 STX19Q8N4C7 294 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 OR5D16Q8NGK9 328 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 NAT14Q8WUY8 206 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 MAP1LC3BQ9GZQ8 125 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 MED31Q9Y3C7 131 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 PTPRFP10586 1907 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 HEATR1Q9H583 2144 aaKnown RBP0.26□□□□□ -2.37
SCFD1-216ENST00000555550 SETXQ7Z333 2677 aaKnown RBP0.26□□□□□ -2.37
SCFD1-216ENST00000555550 PDZD2O15018 2839 aa0.26□□□□□ -2.37
SCFD1-216ENST00000555550 RIF1Q5UIP0 2472 aaKnown RBP0.25□□□□□ -2.37
SCFD1-216ENST00000555550 MUC4Q99102 2169 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 HIST1H2BKO60814 126 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 PROSCO94903 275 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 HIST1H2BJP06899 126 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 KRTAP2-3P0C7H8 128 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 CXCL8P10145 99 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 RAB5CP51148 216 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 EFNA4P52798 201 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 TCTAP57738 103 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 RPS28P62857 69 aaKnown RBP0.25□□□□□ -2.37
SCFD1-216ENST00000555550 PSG9Q00887 426 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 MIR22HGQ0VDD5 57 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 C4orf22Q6V702 233 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 LINC00322Q6ZN03 302 aaPredicted RBP0.25□□□□□ -2.37
SCFD1-216ENST00000555550 DEFB132Q7Z7B7 95 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 STX12Q86Y82 276 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 OR2T35Q8NGX2 323 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 RAB37Q96AX2 223 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 CHCHD1Q96BP2 118 aaKnown RBP0.25□□□□□ -2.37
SCFD1-216ENST00000555550 CCDC115Q96NT0 180 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 KRTAP2-4Q9BYR9 128 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 KRTAP2-1Q9BYU5 128 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 TAS2R7Q9NYW3 318 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 NAT8BQ9UHF3 227 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 KLK9Q9UKQ9 250 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 LY96Q9Y6Y9 160 aa0.25□□□□□ -2.37
SCFD1-216ENST00000555550 KDM6AO15550 1401 aaPredicted RBP0.24□□□□□ -2.37
SCFD1-216ENST00000555550 COL12A1Q99715 3063 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 A0A0J9YY99 117 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 TRBV27A0A0K0K1C4 114 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 LOC107984640A0A0U1RRK4 108 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 LOC105371267A0A1B0GV96 52 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 hDV103S1A0JD37 113 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 CCDC160A6NGH7 325 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 C17orf112F2Z3M2 114 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 RER1O15258 196 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 ERC2-IT1O76042 136 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 OR10J4P0C629 311 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 BCL2P10415 239 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 S100A11P31949 105 aa0.24□□□□□ -2.37
SCFD1-216ENST00000555550 RPL35P42766 123 aaKnown RBP0.24□□□□□ -2.37
SCFD1-216ENST00000555550 FOXA3P55318 350 aaPredicted RBP0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms