RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 Q8N6K4 173 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 OR10AG1Q8NH19 301 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 GRPEL2Q8TAA5 225 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 ISOC1Q96CN7 298 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 RMND5BQ96G75 393 aaPredicted RBP0.98□□□□□ -2.25
VPS29-205ENST00000548539 CCDC32Q9BV29 185 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 UBR2Q8IWV8 1755 aa0.98□□□□□ -2.25
VPS29-205ENST00000548539 COL1A1P02452 1464 aaPredicted RBP0.98□□□□□ -2.25
VPS29-205ENST00000548539 FRMPD1Q5SYB0 1578 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 A0A1B0GV72 72 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 JMJD7-PLA2G4BH0Y9G9 81 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 PFDN1O60925 122 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 MIR22HGQ0VDD5 57 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 DIAPH2-AS1Q14236 149 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 NIT2Q9NQR4 276 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 TPRKBQ9Y3C4 175 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 KIAA1549Q9HCM3 1950 aa0.97□□□□□ -2.25
VPS29-205ENST00000548539 RTL9Q8NET4 1388 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 IFNA21P01568 189 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 BCL2P10415 239 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 FABP4P15090 132 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 SDC2P34741 201 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 FOXI2Q6ZQN5 318 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 OR5H6Q8NGV6 325 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 PSMF1Q92530 271 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 OR4C12Q96R67 309 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 TCEAL2Q9H3H9 227 aaPredicted RBP0.96□□□□□ -2.26
VPS29-205ENST00000548539 LAMTOR2Q9Y2Q5 125 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 TRPM1Q7Z4N2 1603 aa0.96□□□□□ -2.26
VPS29-205ENST00000548539 MYH2Q9UKX2 1941 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 C5orf58C9J3I9 102 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 MRPS36P82909 103 aaKnown RBP0.95□□□□□ -2.26
VPS29-205ENST00000548539 TEX29Q8N6K0 151 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 EFCAB11Q9BUY7 163 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 CST11Q9H112 138 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 SMPXQ9UHP9 88 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 TRAPPC2LQ9UL33 140 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 COL24A1Q17RW2 1714 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 PEAK1Q9H792 1746 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 PLXNA4Q9HCM2 1894 aa0.95□□□□□ -2.26
VPS29-205ENST00000548539 ROS1P08922 2347 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 CASP8AP2Q9UKL3 1982 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 E7EQ34 232 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 NDUFA6P56556 154 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 ZCCHC23Q6ZST2 131 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 LINC00305Q7Z4B0 112 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 OR4B1Q8NGF8 309 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 DIRC1Q969H9 104 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 MCEEQ96PE7 176 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 LIMD2Q9BT23 127 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 CENPHQ9H3R5 247 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 TRAPPC8Q9Y2L5 1435 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 NISCHQ9Y2I1 1504 aa0.94□□□□□ -2.26
VPS29-205ENST00000548539 MYH3P11055 1940 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 CD14P08571 375 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 RPL7P18124 248 aaKnown RBP0.93□□□□□ -2.26
VPS29-205ENST00000548539 SPATA45Q537H7 98 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 SMIM15Q7Z3B0 74 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 LINC00269Q8N2A0 174 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 THEM6Q8WUY1 208 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 PRELID3AQ96N28 172 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 PBRM1Q86U86 1689 aa0.93□□□□□ -2.26
VPS29-205ENST00000548539 ALPK3Q96L96 1907 aa0.92□□□□□ -2.26
VPS29-205ENST00000548539 GLIPR1L1Q6UWM5 242 aa0.92□□□□□ -2.26
VPS29-205ENST00000548539 CCL4L1Q8NHW4 92 aa0.92□□□□□ -2.26
VPS29-205ENST00000548539 CLEC2BQ92478 149 aa0.92□□□□□ -2.26
VPS29-205ENST00000548539 FKBP11Q9NYL4 201 aa0.92□□□□□ -2.26
VPS29-205ENST00000548539 MED31Q9Y3C7 131 aa0.92□□□□□ -2.26
VPS29-205ENST00000548539 PHRF1Q9P1Y6 1649 aaKnown RBP0.92□□□□□ -2.26
VPS29-205ENST00000548539 PIK3C2AO00443 1686 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 HEATR1Q9H583 2144 aaKnown RBP0.91□□□□□ -2.26
VPS29-205ENST00000548539 C3orf85A0A1B0GTC6 90 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 IGLV3-1P01715 115 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 POLR2HP52434 150 aaKnown RBP0.91□□□□□ -2.26
VPS29-205ENST00000548539 TFAMQ00059 246 aaKnown RBP0.91□□□□□ -2.26
VPS29-205ENST00000548539 NEDD8Q15843 81 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 SAMD13Q5VXD3 122 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 OR5AK2Q8NH90 309 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 LXNQ9BS40 222 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 SIP14410 1827 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 ADGBQ8N7X0 1667 aa0.91□□□□□ -2.26
VPS29-205ENST00000548539 KIAA1107Q9UPP5 1409 aa0.9□□□□□ -2.26
VPS29-205ENST00000548539 TRAV13-1A0A0B4J241 112 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 LOC107984156A0A0G2JMH3 177 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 FAM107AO95990 144 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 TRACP01848 142 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 TPT1P13693 172 aaKnown RBP0.9□□□□□ -2.27
VPS29-205ENST00000548539 S100GP29377 79 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 MAXP61244 160 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 OCIAD2Q56VL3 154 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 TMEM128Q5BJH2 165 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 CASC2Q6XLA1 102 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 SBSPONQ8IVN8 264 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 ARL17AQ8IVW1 177 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 OR10AC1Q8NH08 325 aa0.9□□□□□ -2.27
VPS29-205ENST00000548539 MYLKQ15746 1914 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 TRBV27A0A0K0K1C4 114 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 H0YJX3 145 aa0.89□□□□□ -2.27
VPS29-205ENST00000548539 H3BMG7 143 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms