RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 TRBV7-1A0A0A6YYK4 115 aa6.99□□□□□ -1.29
CLIP1-218ENST00000545889 STAG3L2P0CL84 134 aa6.99□□□□□ -1.29
CLIP1-218ENST00000545889 FABP2P12104 132 aa6.99□□□□□ -1.29
CLIP1-218ENST00000545889 LYPD6BQ8NI32 183 aa6.99□□□□□ -1.29
CLIP1-218ENST00000545889 C18orf12Q96KH6 178 aa6.99□□□□□ -1.29
CLIP1-218ENST00000545889 FLNBO75369 2602 aaKnown RBP6.98□□□□□ -1.29
CLIP1-218ENST00000545889 MTORP42345 2549 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 H3BVH4 76 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 SLC17A3O00476 420 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 APOC4P55056 127 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 TMEM249Q2WGJ8 235 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 GCSAMLQ5JQS6 135 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 IGKV3D-20A0A0C4DH25 116 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 A0A1B0GW64 132 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 LINC01619G3V211 115 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 NDUFS7O75251 213 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 CGAP01215 116 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 INSP01308 110 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 NDPQ00604 133 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 BOD1L2Q8IYS8 172 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 Q9H3A6 140 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 DAZ1Q9NQZ3 744 aaKnown RBP6.98□□□□□ -1.29
CLIP1-218ENST00000545889 HOXA3O43365 443 aaPredicted RBP6.98□□□□□ -1.29
CLIP1-218ENST00000545889 OR2K2Q8NGT1 345 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 YPEL4Q96NS1 127 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 NXT2Q9NPJ8 142 aaKnown RBP6.98□□□□□ -1.29
CLIP1-218ENST00000545889 MBNL3Q9NUK0 354 aaKnown RBP6.98□□□□□ -1.29
CLIP1-218ENST00000545889 JKAMPQ9P055 326 aa6.98□□□□□ -1.29
CLIP1-218ENST00000545889 USP9YO00507 2555 aaPredicted RBP6.98□□□□□ -1.29
CLIP1-218ENST00000545889 SRRM4A7MD48 611 aaKnown RBP6.97□□□□□ -1.29
CLIP1-218ENST00000545889 C3orf79P0CE67 100 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 FXYD7P58549 80 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 COA6Q5JTJ3 125 aaKnown RBP6.97□□□□□ -1.29
CLIP1-218ENST00000545889 MTURNQ8N3F0 131 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 OR11H1Q8NG94 326 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 ADARB2-AS1A8MUL3 147 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 PEX7O00628 323 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 CD177Q8N6Q3 437 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 GAFA1Q96PS6 74 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 VSIRQ9H7M9 311 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 MUC3AQ02505 3323 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 SETD2Q9BYW2 2564 aaPredicted RBP6.97□□□□□ -1.29
CLIP1-218ENST00000545889 TRAV9-2A0A087WT02 112 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 A0A087X0K7 114 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 LEPROTL1O95214 131 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 LYL1P12980 280 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 CENPWQ5EE01 88 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 HS3ST6Q96QI5 342 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 NPCDR1Q9BY65 106 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 YLPM1P49750 1951 aaKnown RBP6.97□□□□□ -1.29
CLIP1-218ENST00000545889 DYSFO75923 2080 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 A0A0A6YYD4 124 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 CFHR2P36980 270 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 RPL15P61313 204 aaKnown RBP6.97□□□□□ -1.29
CLIP1-218ENST00000545889 TMEM136Q6ZRR5 245 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 SLC25A48Q6ZT89 311 aaKnown RBP6.97□□□□□ -1.29
CLIP1-218ENST00000545889 OR10AG1Q8NH19 301 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 XCL2Q9UBD3 114 aa6.97□□□□□ -1.29
CLIP1-218ENST00000545889 TSSC4Q9Y5U2 329 aaPredicted RBP6.97□□□□□ -1.29
CLIP1-218ENST00000545889 TRAV8-6A0A0B4J262 113 aa6.96□□□□□ -1.29
CLIP1-218ENST00000545889 A0A1B0GUT8 65 aa6.96□□□□□ -1.29
CLIP1-218ENST00000545889 VCX2Q9H322 139 aa6.96□□□□□ -1.29
CLIP1-218ENST00000545889 FAM223BA6NKX1 122 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 IFI27P40305 119 aaPredicted RBP6.96□□□□□ -1.3
CLIP1-218ENST00000545889 FAM223AQ8IWN6 122 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 PMCHL2Q9BQD1 86 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 IGKV1D-13A0A0B4J2D9 117 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 LOC107984156A0A0G2JMH3 177 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 TMEM50AO95807 157 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 TOMM40O96008 361 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 IGKV1-13P0DP09 117 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 C9orf139Q6ZV77 190 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 ARL17AQ8IVW1 177 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 PRORYQ9H606 182 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 FAM231BA6NCW3 169 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 VENTXO95231 258 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 OR11H2Q8NH07 326 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 SCGB3A1Q96QR1 104 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 OTORQ9NRC9 128 aa6.96□□□□□ -1.3
CLIP1-218ENST00000545889 TRBV7-9A0A0J9YWB2 115 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 SLC25A20O43772 301 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 HSD52Q0P140 79 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 ANAPC13Q9BS18 74 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 SIGLEC9Q9Y336 463 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 KMT2EQ8IZD2 1858 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 F8P00451 2351 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 F2Z2F3 143 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 MMP23AO75900 390 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 HERV-K104P63124 156 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 ZNF324BQ6AW86 544 aaPredicted RBP6.95□□□□□ -1.3
CLIP1-218ENST00000545889 MIR17HGQ75NE6 70 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 PSMG3Q9BT73 122 aaPredicted RBP6.95□□□□□ -1.3
CLIP1-218ENST00000545889 ST20Q9HBF5 79 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 TRAV12-3A0A0B4J271 114 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 SCGB1A1P11684 91 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 PPIFP30405 207 aaKnown RBP6.95□□□□□ -1.3
CLIP1-218ENST00000545889 FOXA3P55318 350 aaPredicted RBP6.95□□□□□ -1.3
CLIP1-218ENST00000545889 SMIM20Q8N5G0 67 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 NRGNQ92686 78 aa6.95□□□□□ -1.3
CLIP1-218ENST00000545889 AKAP13Q12802 2813 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms