RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 NHP2Q9NX24 153 aaKnown RBP1.91□□□□□ -2.1
SKA3-207ENST00000536239 THADAQ6YHU6 1953 aa1.9□□□□□ -2.1
SKA3-207ENST00000536239 BPTFQ12830 3046 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 TRBV20OR9-2A0A075B6H5 130 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 A0A0A6YYD4 124 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 TRAV2A0A0B4J234 112 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 TRAV8-2A0A0B4J237 113 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 TRAV13-1A0A0B4J241 112 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 TRAV8-4A0A0B4J246 113 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 MYMXA0A1B0GTQ4 84 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 OOSP1A8MZH6 123 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 J3QQQ9 107 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PLPP1O14494 284 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 HMGN2P05204 90 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 ACYP1P07311 99 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 CT62P0C5K7 136 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 MGST1P10620 155 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 HMGA1P17096 107 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 LMO2P25791 158 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 RPL13AP40429 203 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 NBL1P41271 181 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 CXCL5P42830 114 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 SSR2P43308 183 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 TNFRSF4P43489 277 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 FOXA3P55318 350 aaPredicted RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 CD164Q04900 197 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 SRYQ05066 204 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 EBI3Q14213 229 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 VWC2Q2TAL6 325 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 MRPL2Q5T653 305 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 HES3Q5TGS1 186 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 FAM231DQ6ZW35 169 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 FAM19A1Q7Z5A9 133 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 RPS19BP1Q86WX3 136 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 PDPNQ86YL7 162 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 AMN1Q8IY45 258 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 ABHD12Q8N2K0 398 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 POM121L12Q8N7R1 296 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 MDS2Q8NDY4 140 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PRSS33Q8NF86 280 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PFN4Q8NHR9 129 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 FAM57AQ8TBR7 257 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 KLK6Q92876 244 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 ARHGAP5-AS1Q96IT6 56 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 C18orf15Q96N68 181 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 CHCHD5Q9BSY4 110 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 RPP25Q9BUL9 199 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 CHAC1Q9BUX1 264 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PLA2G2FQ9BZM2 168 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 AGPAT4-IT1Q9H0P7 198 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 LIME1Q9H400 295 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 SLC25A22Q9H936 323 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PDFQ9HBH1 243 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PSENENQ9NZ42 101 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 TP73-AS1Q9UF72 201 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 LAMTOR3Q9UHA4 124 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PKIGQ9Y2B9 76 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 R4GMQ9 66 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 COL18A1P39060 1754 aa1.9□□□□□ -2.11
SKA3-207ENST00000536239 PHF3Q92576 2039 aaKnown RBP1.9□□□□□ -2.11
SKA3-207ENST00000536239 MYO9BQ13459 2157 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 ATG2BQ96BY7 2078 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 IGLV3-16A0A075B6K0 115 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 IGKV6-21A0A0C4DH24 114 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 A0A0J9YW62 118 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 A0A1B0GTH9 108 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 FAM236DA0A1B0GTK5 79 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 FAM236AA0A1B0GUQ0 79 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 FAM236BA0A1B0GV22 79 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 RBAKDNA6NC62 111 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 EPM2AB3EWF7 344 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 LY6LH3BQJ8 138 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 H7C1H1 209 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 K7EM74 188 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 CHEK1O14757 476 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 SYNGR2O43760 224 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 FCGR3BO75015 233 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 WISP2O76076 250 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 C1orf105O95561 183 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 NPYP01303 97 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 IGKV1D-33P01593 117 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 IGKV1-33P01594 117 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 IGHV3-13P01766 116 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 IGKCP01834 107 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 BGLAPP02818 100 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 P04436 131 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 CD7P09564 240 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 P0DMU3 169 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 FAM231AP0DMU4 169 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 FAM231CP0DMU5 169 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 FAM236CP0DP71 79 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 CRYGSP22914 178 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 GCHFRP30047 84 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 PFN2P35080 140 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 PSMB2P49721 201 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 SSR4P51571 173 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 CCL11P51671 97 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 NCBP2P52298 156 aaKnown RBP eCLIP1.89□□□□□ -2.11
SKA3-207ENST00000536239 MFAP2P55001 183 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 UBE2D3P61077 147 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms