RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 LINC00467Q9BRT7 94 aa3.21□□□□□ -1.9
USP47-204ENST00000525078 NIT2Q9NQR4 276 aa3.21□□□□□ -1.9
USP47-204ENST00000525078 PIK3C2BO00750 1634 aa3.21□□□□□ -1.9
USP47-204ENST00000525078 KNDC1Q76NI1 1749 aa3.21□□□□□ -1.9
USP47-204ENST00000525078 CROCCQ5TZA2 2017 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 MROH2AA6NES4 1674 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 RGS12O14924 1447 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 CPSF1Q10570 1443 aaKnown RBP3.2□□□□□ -1.9
USP47-204ENST00000525078 TNS3Q68CZ2 1445 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 MROH1Q8NDA8 1641 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 IGLV2-18A0A075B6J9 118 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 IGKV2-28A0A075B6P5 120 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 IGHV3-64A0A075B6Q5 118 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.2□□□□□ -1.9
USP47-204ENST00000525078 NCR2O95944 276 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 IGKV2D-28P01615 120 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 SHBGP04278 402 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 KRTAP1-4P0C5Y4 121 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 TMEM258P61165 79 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 MAXP61244 160 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 MRPS10P82664 201 aaKnown RBP3.2□□□□□ -1.9
USP47-204ENST00000525078 EIF4EBP1Q13541 118 aaPredicted RBP3.2□□□□□ -1.9
USP47-204ENST00000525078 TAF9Q16594 264 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 PATE2Q6UY27 113 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 ZNF418Q8TF45 676 aaPredicted RBP3.2□□□□□ -1.9
USP47-204ENST00000525078 PKMYT1Q99640 499 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 TAF9BQ9HBM6 251 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 GREB1Q4ZG55 1949 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 ATP10BO94823 1461 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 NRKQ7Z2Y5 1582 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 UGGT1Q9NYU2 1555 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 PREX1Q8TCU6 1659 aa3.2□□□□□ -1.9
USP47-204ENST00000525078 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.19□□□□□ -1.9
USP47-204ENST00000525078 TRAV3A0A0B4J244 114 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 ZNF670-ZNF695F2Z2N8 137 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 UQCRQO14949 82 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 SLC25A5P05141 298 aaKnown RBP3.19□□□□□ -1.9
USP47-204ENST00000525078 TPT1P13693 172 aaKnown RBP3.19□□□□□ -1.9
USP47-204ENST00000525078 AKR1D1P51857 326 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 MRPS36P82909 103 aaKnown RBP3.19□□□□□ -1.9
USP47-204ENST00000525078 QRFPP83859 136 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 CDK5R1Q15078 307 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 ESRGQ1W209 222 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 DEFB134Q4QY38 66 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 TMEM155Q4W5P6 130 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 DEDD2Q8WXF8 326 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 RETNLBQ9BQ08 111 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 PDCD10Q9BUL8 212 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 RIMS1Q86UR5 1692 aaKnown RBP3.19□□□□□ -1.9
USP47-204ENST00000525078 NUP98P52948 1817 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 SHANK3Q9BYB0 1731 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 SLIT3O75094 1523 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 DLC1Q96QB1 1528 aa3.19□□□□□ -1.9
USP47-204ENST00000525078 ATP7BP35670 1465 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 IGLV3-9A0A075B6K5 115 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 HMSDA8MTL9 139 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 F6UZH7 168 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 G3V3Q6 166 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 HBDP02042 147 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 MGST1P10620 155 aaKnown RBP3.18□□□□□ -1.9
USP47-204ENST00000525078 AZU1P20160 251 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 ERHP84090 104 aaKnown RBP3.18□□□□□ -1.9
USP47-204ENST00000525078 ZNF90Q03938 601 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 DIAPH2-AS1Q14236 149 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 NNATQ16517 81 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 HAGHLQ6PII5 290 aaPredicted RBP3.18□□□□□ -1.9
USP47-204ENST00000525078 GLIPR1L1Q6UWM5 242 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 Q6ZQT0 140 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 LINC00471Q8N535 108 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 DIRC1Q969H9 104 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 TAS2R4Q9NYW5 299 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 SOX21Q9Y651 276 aaPredicted RBP3.18□□□□□ -1.9
USP47-204ENST00000525078 WDR90Q96KV7 1748 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 ABCC3O15438 1527 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 ARHGAP5Q13017 1502 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 NSD3Q9BZ95 1437 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 CDK5RAP2Q96SN8 1893 aa3.18□□□□□ -1.9
USP47-204ENST00000525078 HEATR5AQ86XA9 2040 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 CEP170BQ9Y4F5 1589 aaPredicted RBP3.17□□□□□ -1.9
USP47-204ENST00000525078 TCHHQ07283 1943 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 DLG5Q8TDM6 1919 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 PXDNLA1KZ92 1463 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 TRAV27A0A087WT01 109 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 FAM236AA0A1B0GUQ0 79 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 FAM236BA0A1B0GV22 79 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 ZNF727A8MUV8 499 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 LYRM1O43325 122 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 PMP2P02689 132 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 CLPSP04118 112 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 HLA-DRB4P13762 266 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 HRES1P13985 223 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 FABP4P15090 132 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 LY6EQ16553 131 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 OCIAD2Q56VL3 154 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 CMTM2Q8TAZ6 248 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 COMMD3Q9UBI1 195 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 LY96Q9Y6Y9 160 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 HLA-DRB4X5D2U9 266 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 TULP4Q9NRJ4 1543 aa3.17□□□□□ -1.9
USP47-204ENST00000525078 TRPM6Q9BX84 2022 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms