RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 SNCGO76070 127 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 IGKCP01834 107 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 ZC2HC1BQ5TFG8 222 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 GOLT1AQ6ZVE7 132 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 DLX4Q92988 240 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-213ENST00000523488 FOXC2Q99958 501 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 NDUFA4L2Q9NRX3 87 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 HIF1ANQ9NWT6 349 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 WNK2Q9Y3S1 2297 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 HOXA3O43365 443 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-213ENST00000523488 TCRAP04437 139 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 NXPH1P58417 271 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 PRR30Q53SZ7 412 aaPredicted RBP6.65□□□□□ -1.34
CSMD1-213ENST00000523488 PPDPFLQ8WWR9 84 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 C12orf49Q9H741 205 aa6.65□□□□□ -1.34
CSMD1-213ENST00000523488 NPIPB5A8MRT5 1133 aa6.65□□□□□ -1.35
CSMD1-213ENST00000523488 TMEM262E9PQX1 116 aa6.65□□□□□ -1.35
CSMD1-213ENST00000523488 UPK2O00526 184 aa6.65□□□□□ -1.35
CSMD1-213ENST00000523488 BRI3O95415 125 aa6.65□□□□□ -1.35
CSMD1-213ENST00000523488 SUB1P53999 127 aaKnown RBP eCLIP6.65□□□□□ -1.35
CSMD1-213ENST00000523488 RPL32P62910 135 aaKnown RBP6.65□□□□□ -1.35
CSMD1-213ENST00000523488 ODF1Q14990 250 aa6.65□□□□□ -1.35
CSMD1-213ENST00000523488 LYRM7Q5U5X0 104 aa6.65□□□□□ -1.35
CSMD1-213ENST00000523488 MORN3Q6PF18 240 aaPredicted RBP6.65□□□□□ -1.35
CSMD1-213ENST00000523488 Q86TA4 180 aa6.65□□□□□ -1.35
CSMD1-213ENST00000523488 SPTBN5Q9NRC6 3674 aaKnown RBP6.65□□□□□ -1.35
CSMD1-213ENST00000523488 CENPVL3A0A0U1RRI6 287 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 MRPS12O15235 138 aaKnown RBP6.64□□□□□ -1.35
CSMD1-213ENST00000523488 SCGB1C2P0DMR2 95 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 TWIST1Q15672 202 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 SLC25A45Q8N413 288 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 RPEQ96AT9 228 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 Q9H3A6 140 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 AGRNO00468 2067 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 TRBV20-1A0A075B6N2 111 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 NCBP2LA6PVI3 153 aaKnown RBP6.64□□□□□ -1.35
CSMD1-213ENST00000523488 UBE2D1P51668 147 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 HOXA4Q00056 320 aaPredicted RBP6.64□□□□□ -1.35
CSMD1-213ENST00000523488 MOGAT3Q86VF5 341 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 HARBI1Q96MB7 349 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 METRNQ9UJH8 293 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 IGKV2D-26A0A0A0MRZ7 120 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 DPM2O94777 84 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 RFPL3SP0C7P2 107 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 ALKBH6Q3KRA9 238 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 AMN1Q8IY45 258 aa6.64□□□□□ -1.35
CSMD1-213ENST00000523488 A0A087WX48 190 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 MDP1Q86V88 176 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 OR10X1Q8NGY0 326 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 LEPP41159 167 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 PCNX2A6NKB5 2137 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 VPS13AQ96RL7 3174 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 TIMM8AO60220 97 aaPredicted RBP6.63□□□□□ -1.35
CSMD1-213ENST00000523488 LHBP01229 141 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 PRDX2P32119 198 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 ZNF134P52741 427 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 MBNL2Q5VZF2 373 aaKnown RBP6.63□□□□□ -1.35
CSMD1-213ENST00000523488 PTH2Q96A98 100 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 MAP1LC3AQ9H492 121 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 RAB9BQ9NP90 201 aa6.63□□□□□ -1.35
CSMD1-213ENST00000523488 A8MWV9 139 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 WIPF1O43516 503 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 SRSF9Q13242 221 aaKnown RBP eCLIP6.62□□□□□ -1.35
CSMD1-213ENST00000523488 ZNF833PQ6ZTB9 187 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 LYPD1Q8N2G4 141 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 CARD19Q96LW7 228 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 TRGV9Q99603 122 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 SMKR1H3BMG3 65 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 RHODO00212 210 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 PRRG2O14669 202 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 C17orf58Q2M2W7 97 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 NFE4Q86UQ8 179 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 CNEP1R1Q8N9A8 125 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 MDFICQ9P1T7 246 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 CACNA1AO00555 2505 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 TRAV8-2A0A0B4J237 113 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 ZNF688P0C7X2 276 aa6.62□□□□□ -1.35
CSMD1-213ENST00000523488 SLC25A39Q9BZJ4 359 aaPredicted RBP6.62□□□□□ -1.35
CSMD1-213ENST00000523488 CEP295Q9C0D2 2601 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 PRR14LQ5THK1 2151 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 TMEM213A2RRL7 107 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 TGFAP01135 160 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 PRB4P10163 310 aaPredicted RBP6.61□□□□□ -1.35
CSMD1-213ENST00000523488 PRTN3P24158 256 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 MRPL23Q16540 153 aaKnown RBP6.61□□□□□ -1.35
CSMD1-213ENST00000523488 KLK9Q2XQG4 91 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 DEFB121Q5J5C9 76 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 FAM104BQ5XKR9 115 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 SCGB1D4Q6XE38 83 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 CXXC4Q9H2H0 198 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 YAE1D1Q9NRH1 226 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 KLK9Q9UKQ9 250 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 DOPEY2Q9Y3R5 2298 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 TRAV12-1A0A0B4J245 112 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 SAA2P0DJI9 122 aaPredicted RBP6.61□□□□□ -1.35
CSMD1-213ENST00000523488 OR4C13Q8NGP0 309 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 ASCL2Q99929 193 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 OTORQ9NRC9 128 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 TRAV40A0A0B4J280 105 aa6.61□□□□□ -1.35
CSMD1-213ENST00000523488 ATP5LO75964 103 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms