RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 IGHV3-72A0A0B4J1Y9 119 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 SH2D1AO60880 128 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 EVI2AP22794 236 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 SRSF1Q07955 248 aaKnown RBP eCLIP13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 SEM1Q6ZVN7 128 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 CLUHP3Q96NS8 147 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 ZNF207O43670 478 aaKnown RBP13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 RBP4P02753 201 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 CNTFRP26992 372 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 CCDC144NLQ6NUI1 221 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 ZNF474Q6S9Z5 364 aaPredicted RBP13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 SIGLEC9Q9Y336 463 aa13.44□□□□□ -0.26
SQSTM1-211ENST00000506690 IGLL5B9A064 214 aa13.43□□□□□ -0.26
SQSTM1-211ENST00000506690 HLA-DRB4P13762 266 aa13.43□□□□□ -0.26
SQSTM1-211ENST00000506690 COX8CQ7Z4L0 72 aa13.43□□□□□ -0.26
SQSTM1-211ENST00000506690 HLA-DRB4X5D2U9 266 aa13.43□□□□□ -0.26
SQSTM1-211ENST00000506690 IGKCP01834 107 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 WT1P19544 449 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 FCER1GP30273 86 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 CCL8P80075 99 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 SPAG8Q99932 426 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 LOC400499M0QZD8 3231 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 OTOGLQ3ZCN5 2332 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 CEACAM4O75871 244 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 DLX6P56179 175 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 TWIST1Q15672 202 aa13.42□□□□□ -0.26
SQSTM1-211ENST00000506690 MBD3L4A6NDZ8 208 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 MBD3L3A6NE82 208 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 MBD3L5A6NJ08 208 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 LEPP41159 167 aa13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 MBD3L2Q8NHZ7 208 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 MAP1LC3AQ9H492 121 aa13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 C16orf97H3BN30 126 aa13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 EP300Q09472 2414 aaPredicted RBP13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 RNF185Q96GF1 192 aa13.41□□□□□ -0.26
SQSTM1-211ENST00000506690 CFAP47Q6ZTR5 3102 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 IGLC6P0CF74 106 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 LINC01559Q495D7 138 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 PPP1R27Q86WC6 154 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 ZNF491Q8N8L2 437 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 ZNF479Q96JC4 524 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 NPIPB5A8MRT5 1133 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 H3BMG7 143 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 EGR2P11161 476 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 TCF15Q12870 199 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 PDE6HQ13956 83 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 ETDBQ3ZM63 59 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 SH2D6Q7Z4S9 175 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 S100A7AQ86SG5 101 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 GTSCR1Q86UQ5 136 aa13.4□□□□□ -0.26
SQSTM1-211ENST00000506690 SMG1Q96Q15 3661 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 PRSS1P07477 247 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 KLF17Q5JT82 389 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 ZC2HC1BQ5TFG8 222 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 ZNF575Q86XF7 245 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 FDCSPQ8NFU4 85 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 ARPC1AQ92747 370 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 K7EMI3 77 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 DPM2O94777 84 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 TAL2Q16559 108 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 RNF125Q96EQ8 232 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 AAMDCQ9H7C9 122 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 PRO0461Q9UI25 63 aa13.39□□□□□ -0.27
SQSTM1-211ENST00000506690 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 TNFRSF13BO14836 293 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 GAS8-AS1O95177 125 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 RAB9AP51151 201 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 TCTEX1D4Q5JR98 221 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 LYPD2Q6UXB3 125 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 ZNF502Q8TBZ5 544 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 NXT2Q9NPJ8 142 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 K7EIM0 57 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 NDUFB3O43676 98 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 IGHV1-8P0DP01 117 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 LOXP28300 417 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 SRSF6Q13247 344 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 PLGLAQ15195 96 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 C12orf74Q32Q52 190 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 PRR25Q96S07 402 aa13.38□□□□□ -0.27
SQSTM1-211ENST00000506690 TMEM8BA6NDV4 472 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 ATP5LO75964 103 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 IL4P05112 153 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 TMEM155Q4W5P6 130 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 C22orf34Q6ZV56 151 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 FOXC2Q99958 501 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 CNFNQ9BYD5 112 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 MALRD1Q5VYJ5 2156 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 CKS1BP61024 79 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 IGFL2Q6UWQ7 119 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 PRSS33Q8NF86 280 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 PSMG3-AS1Q96PY0 264 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 MSRB1Q9NZV6 116 aa13.37□□□□□ -0.27
SQSTM1-211ENST00000506690 TRAV17A0A0B4J275 112 aa13.36□□□□□ -0.27
SQSTM1-211ENST00000506690 TMEM238LA0A1B0GVL6 79 aa13.36□□□□□ -0.27
SQSTM1-211ENST00000506690 TNFRSF6BO95407 300 aa13.36□□□□□ -0.27
SQSTM1-211ENST00000506690 CD40P25942 277 aa13.36□□□□□ -0.27
SQSTM1-211ENST00000506690 GAGE13Q4V321 117 aa13.36□□□□□ -0.27
SQSTM1-211ENST00000506690 MAPKAPK5-AS1Q8N8E1 139 aa13.36□□□□□ -0.27
SQSTM1-211ENST00000506690 CTSZQ9UBR2 303 aa13.36□□□□□ -0.27
SQSTM1-211ENST00000506690 TMEM178BH3BS89 294 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms