RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ATP6V0E1O15342 81 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 IGHV4-39P01824 125 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 RPS20P60866 119 aaKnown RBP9.34□□□□□ -0.91
NUP54-202ENST00000502850 RHOGP84095 191 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 PAX8Q06710 450 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 PMCHL1Q16048 86 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 FAM120AOSQ5T036 256 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 C17orf77Q96MU5 243 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 CCL19Q99731 98 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 LOC102724200A0A096LPH7 203 aaPredicted RBP9.34□□□□□ -0.91
NUP54-202ENST00000502850 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.34□□□□□ -0.91
NUP54-202ENST00000502850 M0R2Z0 102 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 GPR183P32249 361 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 RELQ04864 619 aaPredicted RBP9.34□□□□□ -0.91
NUP54-202ENST00000502850 RNASEKQ6P5S7 137 aaKnown RBP9.34□□□□□ -0.91
NUP54-202ENST00000502850 C5orf56Q8N8D9 126 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 SLC50A1Q9BRV3 221 aa9.34□□□□□ -0.91
NUP54-202ENST00000502850 SSBP4Q9BWG4 385 aaPredicted RBP9.34□□□□□ -0.91
NUP54-202ENST00000502850 FAM223BA6NKX1 122 aa9.33□□□□□ -0.92
NUP54-202ENST00000502850 NTF3P20783 257 aa9.33□□□□□ -0.92
NUP54-202ENST00000502850 BMI1P35226 326 aa9.33□□□□□ -0.92
NUP54-202ENST00000502850 CRIP2P52943 208 aaPredicted RBP9.33□□□□□ -0.92
NUP54-202ENST00000502850 CLEC2AQ6UVW9 174 aa9.33□□□□□ -0.92
NUP54-202ENST00000502850 NIT1Q86X76 327 aa9.33□□□□□ -0.92
NUP54-202ENST00000502850 FAM223AQ8IWN6 122 aa9.33□□□□□ -0.92
NUP54-202ENST00000502850 ZMAT5Q9UDW3 170 aaKnown RBP9.33□□□□□ -0.92
NUP54-202ENST00000502850 MYO9AB2RTY4 2548 aa9.33□□□□□ -0.92
NUP54-202ENST00000502850 IGHV1-69DA0A0B4J2H0 117 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 M0QZK8 103 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 M0R143 59 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 M0R3E3 92 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 IGHV1-69P01742 117 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 IGHV3-23P01764 117 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 APOHP02749 345 aaPredicted RBP9.32□□□□□ -0.92
NUP54-202ENST00000502850 SRSF2Q01130 221 aaKnown RBP9.32□□□□□ -0.92
NUP54-202ENST00000502850 KLHDC1Q8N7A1 406 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 MIEN1Q9BRT3 115 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 ZFAND3Q9H8U3 227 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 CLEC5AQ9NY25 188 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 APCP25054 2843 aa9.32□□□□□ -0.92
NUP54-202ENST00000502850 C20orf202A1L168 122 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 TMEM189A5PLL7 270 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 RBAKDNA6NC62 111 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 FAM181BA6NEQ2 426 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 OR5AL1P0C617 328 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 C3orf79P0CE67 100 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 PIP4P2Q8N4L2 257 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 MRPL53Q96EL3 112 aaKnown RBP9.31□□□□□ -0.92
NUP54-202ENST00000502850 METTL26Q96S19 204 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 SPOCK3Q9BQ16 436 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 ABCA12Q86UK0 2595 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 LRBAP50851 2863 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 ZNF785A8K8V0 405 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 BTF3P20290 206 aaKnown RBP9.31□□□□□ -0.92
NUP54-202ENST00000502850 ATP5G2Q06055 141 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 C10orf105Q8TEF2 133 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 PRR25Q96S07 402 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 MEGF9Q9H1U4 602 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 PAM16Q9Y3D7 125 aa9.31□□□□□ -0.92
NUP54-202ENST00000502850 TRAV41A0A0B4J266 112 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 H3BUA1 57 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 BUB3O43684 328 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 SH2D1AO60880 128 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 BRI3O95415 125 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 CLEC3BP05452 202 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 CD33P20138 364 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 ZNF493Q6ZR52 646 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 FAM19A2Q8N3H0 131 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 Q8N976 141 aa9.3□□□□□ -0.92
NUP54-202ENST00000502850 ARMS2P0C7Q2 107 aa9.29□□□□□ -0.92
NUP54-202ENST00000502850 DSCR9P59020 149 aa9.29□□□□□ -0.92
NUP54-202ENST00000502850 BCL6BQ8N143 479 aaPredicted RBP9.29□□□□□ -0.92
NUP54-202ENST00000502850 CCDC140Q96MF4 163 aa9.29□□□□□ -0.92
NUP54-202ENST00000502850 HIF1ANQ9NWT6 349 aa9.29□□□□□ -0.92
NUP54-202ENST00000502850 ABCA1O95477 2261 aa9.29□□□□□ -0.92
NUP54-202ENST00000502850 IGKV2-40A0A087WW87 121 aaPredicted RBP9.28□□□□□ -0.92
NUP54-202ENST00000502850 IGKV2D-40P01614 121 aaPredicted RBP9.28□□□□□ -0.92
NUP54-202ENST00000502850 LINC00614P0C842 121 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 CRIP1P50238 77 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 SPATA45Q537H7 98 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 LCN12Q6JVE5 192 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 CLEC19AQ6UXS0 136 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 ZNF705AQ6ZN79 300 aaPredicted RBP9.28□□□□□ -0.92
NUP54-202ENST00000502850 C8orf49Q96NF6 230 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 TMEM70Q9BUB7 260 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 UQCR10Q9UDW1 63 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 SMAD5-AS1Q9Y6J3 95 aa9.28□□□□□ -0.92
NUP54-202ENST00000502850 TRAV40A0A0B4J280 105 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 IGHV4-61A0A0C4DH41 118 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 GATA3P23771 443 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 CTRLP40313 264 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 ATP5J2P56134 94 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 SSTP61278 116 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 C19orf54Q5BKX5 351 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 HSPB8Q9UJY1 196 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 RNF114Q9Y508 228 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 WNK2Q9Y3S1 2297 aa9.27□□□□□ -0.92
NUP54-202ENST00000502850 FBN2P35556 2912 aa9.27□□□□□ -0.93
NUP54-202ENST00000502850 PDZD2O15018 2839 aa9.27□□□□□ -0.93
NUP54-202ENST00000502850 DCHS2Q6V1P9 2916 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms