RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 MRPL51Q4U2R6 128 aaKnown RBP10.27□□□□□ -0.77
SHOX2-205ENST00000490689 FAM104BQ5XKR9 115 aa10.27□□□□□ -0.77
SHOX2-205ENST00000490689 LINC00322Q6ZN03 302 aaPredicted RBP10.27□□□□□ -0.77
SHOX2-205ENST00000490689 IGHV1-3A0A0C4DH29 117 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 H3BMG7 143 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 IGKV3-20P01619 116 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 RPL13AP40429 203 aaKnown RBP10.26□□□□□ -0.77
SHOX2-205ENST00000490689 EMP1P54849 157 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 CT83Q5H943 113 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 IGFBPL1Q8WX77 278 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 CSPG4Q6UVK1 2322 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 WNK1Q9H4A3 2382 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 CKS1BP61024 79 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 PVRIGQ6DKI7 326 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 DDB2Q92466 427 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 COLQQ9Y215 455 aaPredicted RBP10.26□□□□□ -0.77
SHOX2-205ENST00000490689 TEX48A0A1B0GUV7 120 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 HAX1O00165 279 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 NBR2O15453 112 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 HOXA3O43365 443 aaPredicted RBP10.26□□□□□ -0.77
SHOX2-205ENST00000490689 CLEC19AQ6UXS0 136 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 SCRT2Q9NQ03 307 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 CHD9Q3L8U1 2897 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 TMEM8BA6NDV4 472 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 PAX1P15863 534 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 AZU1P20160 251 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 ERCC8Q13216 396 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 ARPC1AQ92747 370 aa10.26□□□□□ -0.77
SHOX2-205ENST00000490689 IGHV3OR16-10A0A075B7F0 116 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 ZNF815PA8K554 130 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 CCDC144NLQ6NUI1 221 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 Q8N7P7 452 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 TLN1Q9Y490 2541 aaKnown RBP10.25□□□□□ -0.77
SHOX2-205ENST00000490689 LY6HO94772 140 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 PPBPP02775 128 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 OR10J6PQ8NGY7 276 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 TMEM178BH3BS89 294 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 CD59P13987 128 aa10.25□□□□□ -0.77
SHOX2-205ENST00000490689 RNASE6Q93091 150 aaKnown RBP10.25□□□□□ -0.77
SHOX2-205ENST00000490689 C22orf46C9J442 243 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 IGLC1P0CG04 106 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 POU2AF1Q16633 256 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 SP5Q6BEB4 398 aaPredicted RBP10.24□□□□□ -0.77
SHOX2-205ENST00000490689 SORL1Q92673 2214 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 CPAMD8Q8IZJ3 1885 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 TRBV19A0A075B6N1 114 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 LTAP01374 205 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 RITA1Q96K30 269 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 TNFRSF6BO95407 300 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 FAM106CPP0CH98 169 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 KLRD1Q13241 179 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 FAM106AQ4KMX7 169 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 SH2D6Q7Z4S9 175 aa10.24□□□□□ -0.77
SHOX2-205ENST00000490689 NEU4Q8WWR8 484 aaPredicted RBP10.24□□□□□ -0.77
SHOX2-205ENST00000490689 PRSS46E5RG02 174 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 LGALS3P17931 250 aaKnown RBP10.23□□□□□ -0.77
SHOX2-205ENST00000490689 TTC32Q5I0X7 151 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 ZNF833PQ6ZTB9 187 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 PGPEP1Q9NXJ5 209 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 LINC00527Q9UJ94 153 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 MSMPQ1L6U9 139 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 KHDC1LQ5JSQ8 128 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 SHANK2-AS3Q9BTD1 123 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 CLEC2AQ6UVW9 174 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 SPATA12Q7Z6I5 190 aa10.23□□□□□ -0.77
SHOX2-205ENST00000490689 TRAV26-2A0A0B4J265 109 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 NDUFS7O75251 213 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 GATA1P15976 413 aaPredicted RBP10.22□□□□□ -0.77
SHOX2-205ENST00000490689 SRSF1Q07955 248 aaKnown RBP eCLIP10.22□□□□□ -0.77
SHOX2-205ENST00000490689 LOXL1Q08397 574 aaPredicted RBP10.22□□□□□ -0.77
SHOX2-205ENST00000490689 Q8N976 141 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 CHTOPQ9Y3Y2 248 aaKnown RBP10.22□□□□□ -0.77
SHOX2-205ENST00000490689 IGHV3-64A0A075B6Q5 118 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 ADIPOQQ15848 244 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 LGALS9BQ3B8N2 356 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 LINC01545Q5VT33 79 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 LGALS9CQ6DKI2 356 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 RNF182Q8N6D2 247 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 ZNF256Q9Y2P7 627 aaPredicted RBP10.22□□□□□ -0.77
SHOX2-205ENST00000490689 NACAE9PAV3 2078 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 VCANP13611 3396 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 TRAV8-2A0A0B4J237 113 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 NDUFS8O00217 210 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 LAGE3Q14657 143 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 MSRB1Q9NZV6 116 aa10.22□□□□□ -0.77
SHOX2-205ENST00000490689 PTPRSQ13332 1948 aa10.21□□□□□ -0.77
SHOX2-205ENST00000490689 IGHG3P01860 377 aa10.21□□□□□ -0.77
SHOX2-205ENST00000490689 HLA-DMBP28068 263 aa10.21□□□□□ -0.77
SHOX2-205ENST00000490689 FOXC1Q12948 553 aa10.21□□□□□ -0.77
SHOX2-205ENST00000490689 EIF4EBP1Q13541 118 aaPredicted RBP10.21□□□□□ -0.77
SHOX2-205ENST00000490689 MRPL35Q9NZE8 188 aaKnown RBP10.21□□□□□ -0.77
SHOX2-205ENST00000490689 NPIPB6E9PJ23 425 aa10.21□□□□□ -0.78
SHOX2-205ENST00000490689 CDX4O14627 284 aaPredicted RBP10.21□□□□□ -0.78
SHOX2-205ENST00000490689 ZNF883P0CG24 379 aa10.21□□□□□ -0.78
SHOX2-205ENST00000490689 PF4V1P10720 104 aa10.21□□□□□ -0.78
SHOX2-205ENST00000490689 IGLV1-44P01699 117 aa10.21□□□□□ -0.78
SHOX2-205ENST00000490689 PRTN3P24158 256 aa10.21□□□□□ -0.78
SHOX2-205ENST00000490689 EFNA4P52798 201 aa10.21□□□□□ -0.78
SHOX2-205ENST00000490689 DPF1Q92782 380 aa10.21□□□□□ -0.78
SHOX2-205ENST00000490689 PTPN13Q12923 2485 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms