RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 M0R3E3 92 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 SH2D1AO60880 128 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 SCGB2A1O75556 95 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 TNFAIP6P98066 277 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-209ENST00000487188 SRSF6Q13247 344 aaKnown RBP4.96□□□□□ -1.62
VPS13D-209ENST00000487188 TMEM30BQ3MIR4 351 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 DUX4L9Q6RFH8 374 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-209ENST00000487188 PLXNB1O43157 2135 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 PRSS29PA6NIE9 313 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 A8MWV9 139 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 CLEC3BP05452 202 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 LINC01559Q495D7 138 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 PIP4P2Q8N4L2 257 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 MRPL35Q9NZE8 188 aaKnown RBP4.96□□□□□ -1.62
VPS13D-209ENST00000487188 LY6G6EA0A0G2JKS1 128 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 E7EUB6 86 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 TMEM262E9PQX1 116 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 SRSF1Q07955 248 aaKnown RBP eCLIP4.96□□□□□ -1.623e-6■■■■□ 22.5
VPS13D-209ENST00000487188 Q6ZT83 130 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 U3KQA8 63 aa4.96□□□□□ -1.62
VPS13D-209ENST00000487188 LINC01549A6NIU2 74 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 PRRG2O14669 202 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE2BQ13066 116 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE2EQ4V326 116 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 ZNF493Q6ZR52 646 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 Q71RC1 249 aaPredicted RBP4.95□□□□□ -1.62
VPS13D-209ENST00000487188 ATP6V0E2Q8NHE4 81 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 TMEM133Q9H2Q1 129 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 KLK15Q9H2R5 256 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE2DQ9UEU5 116 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 CNOT1A5YKK6 2376 aaKnown RBP4.95□□□□□ -1.62
VPS13D-209ENST00000487188 AGRNO00468 2067 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 TRAV8-2A0A0B4J237 113 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 XGP55808 180 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 SMIM20Q8N5G0 67 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 PHLDA1Q8WV24 401 aaPredicted RBP4.95□□□□□ -1.62
VPS13D-209ENST00000487188 HIF1ANQ9NWT6 349 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 RAXQ9Y2V3 346 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 PTPRBP23467 1997 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 TM4SF5O14894 197 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 TNFRSF6BO95407 300 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 CCL3L1P16619 93 aa4.95□□□□□ -1.62
VPS13D-209ENST00000487188 GVINP1Q7Z2Y8 2422 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 SPTA1P02549 2419 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 TRBV19A0A075B6N1 114 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 GATA3P23771 443 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 LPAL2Q16609 132 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 CR1LQ2VPA4 569 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 ANXA2RQ3ZCQ2 193 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 PTH2Q96A98 100 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 SIT1Q9Y3P8 196 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 FRYLO94915 3013 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 IGKV2-40A0A087WW87 121 aaPredicted RBP4.94□□□□□ -1.62
VPS13D-209ENST00000487188 IGKV2D-40P01614 121 aaPredicted RBP4.94□□□□□ -1.62
VPS13D-209ENST00000487188 PRTN3P24158 256 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 PLNP26678 52 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 HERV-K104P63124 156 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 C17orf77Q96MU5 243 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 TPSG1Q9NRR2 321 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 TMEM14CQ9P0S9 112 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 SPRR3Q9UBC9 169 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 PROCRQ9UNN8 238 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 LINC00312Q9Y6C7 94 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 ZNF815PA8K554 130 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 ZNF688P0C7X2 276 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 Q1RN00 199 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 ZNF833PQ6ZTB9 187 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 GATD1Q8NB37 220 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 VKORC1Q9BQB6 163 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 U3KQK5 164 aa4.94□□□□□ -1.62
VPS13D-209ENST00000487188 APC2O95996 2303 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 MYMXA0A1B0GTQ4 84 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 WI2-2373I1.2A0A1W2PRP0 233 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 IGKV3-15P01624 115 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 IGLV2-11P01706 119 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 TEN1Q86WV5 123 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 MAPKAPK5-AS1Q8N8E1 139 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 Q8TAT8 98 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 GAFA1Q96PS6 74 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 DCHS1Q96JQ0 3298 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 IGHV1-18A0A0C4DH31 117 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 FSTL3O95633 263 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 TSPAN13O95857 204 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 PIFOQ8TCI5 191 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 TRBV6-1A0A0K0K1D8 114 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE12JA6NER3 117 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 FAM90A27PA6NNH2 459 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 INS-IGF2F8WCM5 200 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE7O76087 117 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE12FP0CL80 117 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE12GP0CL81 117 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE12IP0CL82 117 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 CGB3P0DN86 165 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 CGB7P0DN87 165 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 GAGE4Q13068 117 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 LAGE3Q14657 143 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 TMEM78Q5T7P6 136 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 LYPD1Q8N2G4 141 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 CDIP1Q9H305 208 aa4.93□□□□□ -1.62
VPS13D-209ENST00000487188 CACNA1HO95180 2353 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms