RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 RTL8BQ17RB0 113 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 C5orf64Q2M2E5 130 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 LDLRAD2Q5SZI1 272 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 MINOS1Q5TGZ0 78 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 CYB5R2Q6BCY4 276 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 PRSS54Q6PEW0 395 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 STX12Q86Y82 276 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 PDPNQ86YL7 162 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 WFDC11Q8NEX6 87 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 OR10G4Q8NGN3 311 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 OR4C13Q8NGP0 309 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 PPP1R1CQ8WVI7 109 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 FLYWCH2Q96CP2 140 aaKnown RBP2.68□□□□□ -1.98
PTCD3-216ENST00000487043 C12orf57Q99622 126 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 MRPL20Q9BYC9 149 aaKnown RBP2.68□□□□□ -1.98
PTCD3-216ENST00000487043 SAV1Q9H4B6 383 aaPredicted RBP2.68□□□□□ -1.98
PTCD3-216ENST00000487043 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.68□□□□□ -1.98
PTCD3-216ENST00000487043 GSKIPQ9P0R6 139 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 WASHC3Q9Y3C0 194 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 MINOS1-NBL1R4GNA1 71 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 ABCA2Q9BZC7 2435 aa2.68□□□□□ -1.98
PTCD3-216ENST00000487043 HECTD1Q9ULT8 2610 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 IGHV1-69DA0A0B4J2H0 117 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 A0A0D9SG52 128 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 RAB19A4D1S5 217 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 K7EPK0 472 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 UPK2O00526 184 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 NPFFO15130 113 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 ARPC5O15511 151 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 SYNGR2O43760 224 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 DEDDO75618 318 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 IGHV1-69P01742 117 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 IGKV1-16P04430 117 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 SMIM6P0DI80 62 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 PET100P0DJ07 73 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 S100A11P31949 105 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 BRS3P32247 399 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 AKR1D1P51857 326 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 AKR1C2P52895 323 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 UBE2KP61086 200 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 HSPE1P61604 102 aaKnown RBP2.67□□□□□ -1.98
PTCD3-216ENST00000487043 PAFAH1B2P68402 229 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 ERCC8Q13216 396 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 SLAQ13239 276 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 KLRD1Q13241 179 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 TMEM249Q2WGJ8 235 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 VMA21Q3ZAQ7 101 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 LCE3CQ5T5A8 94 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 CEMP1Q6PRD7 247 aaPredicted RBP2.67□□□□□ -1.98
PTCD3-216ENST00000487043 DYNAPQ8N1N2 210 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 SVBPQ8N300 66 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 OR4A5Q8NH83 315 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 OR1S1Q8NH92 325 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 RNASE11Q8TAA1 199 aaKnown RBP2.67□□□□□ -1.98
PTCD3-216ENST00000487043 VSTM2AQ8TAG5 236 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 TMEM167AQ8TBQ9 72 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 FAM210BQ96KR6 192 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 NKX6-2Q9C056 277 aaPredicted RBP2.67□□□□□ -1.98
PTCD3-216ENST00000487043 BET1LQ9NYM9 111 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 CACFD1Q9UGQ2 172 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 TNFSF18Q9UNG2 199 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 CELA1Q9UNI1 258 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 HILPDAQ9Y5L2 63 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 WNK2Q9Y3S1 2297 aa2.67□□□□□ -1.98
PTCD3-216ENST00000487043 ASH1LQ9NR48 2969 aaKnown RBP2.67□□□□□ -1.98
PTCD3-216ENST00000487043 PRRC2AP48634 2157 aaKnown RBP2.66□□□□□ -1.98
PTCD3-216ENST00000487043 FXYD6-FXYD2A0A087WZ82 144 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 IGHV3-72A0A0B4J1Y9 119 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 TRAV3A0A0B4J244 114 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 TEX50A0A1B0GTY4 177 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 DNASE2O00115 360 aaPredicted RBP2.66□□□□□ -1.98
PTCD3-216ENST00000487043 MED6O75586 246 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 NDUFA3O95167 84 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 IGKV1D-33P01593 117 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 IGKV1-33P01594 117 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 APOC3P02656 99 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 FABP1P07148 127 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 KRTAP1-4P0C5Y4 121 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 SAA1P0DJI8 122 aaPredicted RBP2.66□□□□□ -1.98
PTCD3-216ENST00000487043 CXCL2P19875 107 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 PVALBP20472 110 aaPredicted RBP2.66□□□□□ -1.98
PTCD3-216ENST00000487043 RPL12P30050 165 aaKnown RBP2.66□□□□□ -1.98
PTCD3-216ENST00000487043 PFN2P35080 140 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 DYNLT3P51808 116 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 TAS2R30P59541 319 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 S100A10P60903 97 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 SPCS3P61009 180 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 RAB4BP61018 213 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 RAB5BP61020 215 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 CACNG7P62955 275 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 UBA52P62987 128 aaKnown RBP2.66□□□□□ -1.98
PTCD3-216ENST00000487043 PRR3P79522 188 aaKnown RBP2.66□□□□□ -1.98
PTCD3-216ENST00000487043 TNFRSF9Q07011 255 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 OR2F1Q13607 317 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 ZNF345Q14585 488 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 ORMDL2Q53FV1 153 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 PCP2Q8IVA1 136 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 KCNRGQ8N5I3 272 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 TEX29Q8N6K0 151 aa2.66□□□□□ -1.98
PTCD3-216ENST00000487043 Q8N6K4 173 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms