RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 MAP1LC3AQ9H492 121 aa8.37□□□□□ -1.07
CCDC171-208ENST00000486641 CADP27708 2225 aa8.37□□□□□ -1.07
CCDC171-208ENST00000486641 IGHV3-72A0A0B4J1Y9 119 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 LINC01546A6NGU7 62 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 ENSAO43768 121 aaKnown RBP8.36□□□□□ -1.07
CCDC171-208ENST00000486641 RBP4P02753 201 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 MT-ATP8P03928 68 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 THBDP07204 575 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 GATA4P43694 442 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 TAL2Q16559 108 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 RNF185Q96GF1 192 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 HIST1H4GQ99525 98 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 MSRB1Q9NZV6 116 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 CYSLTR1Q9Y271 337 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 ICE1Q9Y2F5 2266 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 COL27A1Q8IZC6 1860 aaPredicted RBP8.36□□□□□ -1.07
CCDC171-208ENST00000486641 SMG1Q96Q15 3661 aaKnown RBP8.36□□□□□ -1.07
CCDC171-208ENST00000486641 INTS1Q8N201 2190 aaKnown RBP8.36□□□□□ -1.07
CCDC171-208ENST00000486641 SPENQ96T58 3664 aaKnown RBP8.36□□□□□ -1.07
CCDC171-208ENST00000486641 GATA3P23771 443 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 RPL27AP46776 148 aaKnown RBP8.36□□□□□ -1.07
CCDC171-208ENST00000486641 LCNL1Q6ZST4 164 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 SCNM1Q9BWG6 230 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 ZNF576Q9H609 170 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 SLC25A15Q9Y619 301 aa8.36□□□□□ -1.07
CCDC171-208ENST00000486641 ABCA1O95477 2261 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 K7EM74 188 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 M0R1B8 84 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 TSPAN13O95857 204 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 EGR2P11161 476 aaPredicted RBP8.35□□□□□ -1.07
CCDC171-208ENST00000486641 HLA-DRB4P13762 266 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 CNTFRP26992 372 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 SMCPP49901 116 aaPredicted RBP8.35□□□□□ -1.07
CCDC171-208ENST00000486641 TNFAIP6P98066 277 aaPredicted RBP8.35□□□□□ -1.07
CCDC171-208ENST00000486641 FHL3Q13643 280 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 TMEM200BQ69YZ2 307 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 NFE4Q86UQ8 179 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 LYPD1Q8N2G4 141 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 FAM169BQ8N8A8 192 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 MAFAQ8NHW3 353 aaPredicted RBP8.35□□□□□ -1.07
CCDC171-208ENST00000486641 TMEM158Q8WZ71 300 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 RASL11BQ9BPW5 248 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 SHANK2-AS3Q9BTD1 123 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 HLA-DRB4X5D2U9 266 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 FCN3O75636 299 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 IGHV1-46P01743 117 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 SRSF6Q13247 344 aaKnown RBP8.35□□□□□ -1.07
CCDC171-208ENST00000486641 ZNF575Q86XF7 245 aa8.35□□□□□ -1.07
CCDC171-208ENST00000486641 MRPL35Q9NZE8 188 aaKnown RBP8.35□□□□□ -1.07
CCDC171-208ENST00000486641 H3BRN7 92 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 ATP5LO75964 103 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 TNFRSF6BO95407 300 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 IGKV1-17P01599 117 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 GATA1P15976 413 aaPredicted RBP8.34□□□□□ -1.07
CCDC171-208ENST00000486641 GLRXP35754 106 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 CCL11P51671 97 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 KLRD1Q13241 179 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 RNF183Q96D59 192 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 C1QTNF4Q9BXJ3 329 aa8.34□□□□□ -1.07
CCDC171-208ENST00000486641 TRBV7-3A0A075B6L6 115 aa8.34□□□□□ -1.08
CCDC171-208ENST00000486641 A0A1W2PNU3 283 aaPredicted RBP8.34□□□□□ -1.08
CCDC171-208ENST00000486641 MRPS12O15235 138 aaKnown RBP8.34□□□□□ -1.08
CCDC171-208ENST00000486641 XGP55808 180 aa8.34□□□□□ -1.08
CCDC171-208ENST00000486641 ATP1A1-AS1Q5TC04 95 aa8.34□□□□□ -1.08
CCDC171-208ENST00000486641 MORN3Q6PF18 240 aaPredicted RBP8.34□□□□□ -1.08
CCDC171-208ENST00000486641 GLMPQ8WWB7 406 aa8.34□□□□□ -1.08
CCDC171-208ENST00000486641 SIT1Q9Y3P8 196 aa8.34□□□□□ -1.08
CCDC171-208ENST00000486641 IGLV3-9A0A075B6K5 115 aa8.33□□□□□ -1.08
CCDC171-208ENST00000486641 I3L2K1 104 aa8.33□□□□□ -1.08
CCDC171-208ENST00000486641 IGLC6P0CF74 106 aa8.33□□□□□ -1.08
CCDC171-208ENST00000486641 ZNF80P51504 273 aaPredicted RBP8.33□□□□□ -1.08
CCDC171-208ENST00000486641 C5orf64Q2M2E5 130 aa8.33□□□□□ -1.08
CCDC171-208ENST00000486641 CFAP126Q5VTH2 177 aa8.33□□□□□ -1.08
CCDC171-208ENST00000486641 Q6ZUT4 128 aa8.33□□□□□ -1.08
CCDC171-208ENST00000486641 NXT2Q9NPJ8 142 aaKnown RBP8.33□□□□□ -1.08
CCDC171-208ENST00000486641 COLQQ9Y215 455 aaPredicted RBP8.33□□□□□ -1.08
CCDC171-208ENST00000486641 DCHS1Q96JQ0 3298 aa8.33□□□□□ -1.08
CCDC171-208ENST00000486641 HOXA3O43365 443 aaPredicted RBP8.32□□□□□ -1.08
CCDC171-208ENST00000486641 TEX36Q5VZQ5 186 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 ATP6V0E2Q8NHE4 81 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 ERG28Q9UKR5 140 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 PROCRQ9UNN8 238 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 IGKV2-40A0A087WW87 121 aaPredicted RBP8.32□□□□□ -1.08
CCDC171-208ENST00000486641 OR11H12B2RN74 326 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 TEX22C9J3V5 150 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 IGKV2D-40P01614 121 aaPredicted RBP8.32□□□□□ -1.08
CCDC171-208ENST00000486641 ZNF491Q8N8L2 437 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 OR11H1Q8NG94 326 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 OR11H2Q8NH07 326 aa8.32□□□□□ -1.08
CCDC171-208ENST00000486641 CEACAM4O75871 244 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 NDUFA3O95167 84 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 CRYGBP07316 175 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 WT1P19544 449 aaPredicted RBP8.31□□□□□ -1.08
CCDC171-208ENST00000486641 TDHQ8IZJ6 230 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 LINC00311Q8N616 119 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 TMEM190Q8WZ59 177 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 PRR25Q96S07 402 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 SS18L2Q9UHA2 77 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 SIGLEC9Q9Y336 463 aa8.31□□□□□ -1.08
CCDC171-208ENST00000486641 WDFY4Q6ZS81 3184 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms